Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O23
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   258   2e-69
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    36   0.020
U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop hel...    29   2.3  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical pr...    28   5.4  
X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.        28   5.4  
U41015-5|AAA82310.1|  166|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  258 bits (632), Expect = 2e-69
 Identities = 112/162 (69%), Positives = 137/162 (84%)
 Frame = +3

Query: 87  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 266
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 267 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 446
           + FRDPYK+KT K   +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K 
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120

Query: 447 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKEVLPSSN 572
           GDRG +ARASGN+ATVI HNPD K+TR++LPSGAK+V+ S N
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVN 162


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 381 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 539
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop helix
           protein 14 protein.
          Length = 246

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 499 PITVAKLPEARASRPRSPIFSSKLHTIVPSGIAPTGI 389
           PI+   +P  R SRP  P+  S +H++ P  +  T +
Sbjct: 47  PISTLLVPPIRLSRPAFPLTISLIHSVHPHSLLATTV 83


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 87  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 197
           +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 HGYIKGVVKDIIHDPGRGAPLAVVHFR 278
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 HGYIKGVVKDIIHDPGRGAPLAVVHFR 278
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 135 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 260
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical
           protein W09C2.1b protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 LWQESNSRSWQCNACGCY 406
           LW+   S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244


>Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical
           protein W09C2.1a protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 LWQESNSRSWQCNACGCY 406
           LW+   S ++ CNACG Y
Sbjct: 299 LWRRDGSGNYLCNACGLY 316


>X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 LWQESNSRSWQCNACGCY 406
           LW+   S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244


>U41015-5|AAA82310.1|  166|Caenorhabditis elegans Hypothetical
           protein F20B6.1 protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 509 RIVTYNCGKIARGASQSSSITHLFFQITHNCTFRHSTHRHY 387
           R+ T +C +I  G      ITH   ++    T + S   HY
Sbjct: 40  RVYTESCTEIEIGGKSKDKITHRVLKVVVKATGQESKLNHY 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,131,330
Number of Sequences: 27780
Number of extensions: 322409
Number of successful extensions: 718
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)