Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O21
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    54   1e-08
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   1.9  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   3.3  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    25   7.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   7.5  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    24   9.9  

>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 25/35 (71%), Positives = 29/35 (82%)
 Frame = +1

Query: 358 TRTEQRVKMNRMRQRIAQRLKDAQNTNAMLTTFNE 462
           +R E RVKMNRMR RIA+RLK++QN  A LTTFNE
Sbjct: 217 SRNEDRVKMNRMRLRIAERLKESQNRAASLTTFNE 251


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 270 TSGSDTSRSSHRNSHCESSTSGLQQGDRRHANGTAR*NESHASTH 404
           +S   +S SSH++S    S+S        H N T+  + SH+S+H
Sbjct: 396 SSSHSSSLSSHKSSSSSKSSSAPVSSAFYH-NSTSSRSSSHSSSH 439


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/58 (25%), Positives = 22/58 (37%)
 Frame = +3

Query: 279 SDTSRSSHRNSHCESSTSGLQQGDRRHANGTAR*NESHASTHRSTVEGRSEHERYADD 452
           SD+S +SH +S+     S  + G   H N      + H   H         H  + DD
Sbjct: 259 SDSSETSHESSNSNLKKSS-ESGSTNHHNNHESDKDLHHEGHHHHHHHHHHHHSHDDD 315


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +3

Query: 267 DTSGSDTSRSSHRNSHCESS--TSGL 338
           D+ GSD S S+  N+H ESS  TSG+
Sbjct: 58  DSVGSDASVSNGHNNHNESSLWTSGI 83


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 286 RHAQAIETATVKVPPQDYSKEIDGTRTEQRVKMNRM 393
           RH    ++  + VPP    +EI   R+EQ ++  +M
Sbjct: 105 RHGSCGKSVILYVPPGTVIREISAVRSEQSLEWVQM 140


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 270 TSGSDTSRSSHRNSHCESSTSGLQQGDRRHANGTAR*NESHASTHRSTV 416
           T  +DTS  +    +  SSTS +Q     +A+ T   + +  S+  S+V
Sbjct: 496 TEATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSV 544


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 259 ISSIPVAAIRHAQAIETATVKVPPQDYSKEIDGTRTEQRVKMNRMRQRIAQRLKDAQN 432
           I + P AA+R   A  ++T  +      ++ID T    R  ++++ +R  +RL   Q+
Sbjct: 9   IPAEPSAAVRSGNAAASSTPNMKTAAIQQQIDDTVGIMRENISKVSER-GERLDSLQD 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.129    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,222,251
Number of Sequences: 5004
Number of extensions: 16406
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)