Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O21
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907...    52   2e-07
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494...    49   2e-06
09_01_0019 + 403078-404211                                             33   0.11 
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239...    27   9.8  
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951...    27   9.8  

>04_03_0767 +
           19389337-19389381,19390586-19390643,19390720-19390759,
           19390859-19390926,19391007-19391081,19391161-19391216,
           19391317-19391361,19391450-19391701,19391787-19391881,
           19392395-19392485,19392578-19392688,19392788-19392982,
           19393071-19393262
          Length = 440

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
 Frame = +1

Query: 304 ETATVKVPPQDYSKE--IDGTRTEQRVKMNRMRQRIAQRLKDAQNTNAMLTTFNE 462
           E   + +PP+    E  +     E+RV M R+R+RIA RLKD+QNT AMLTTFNE
Sbjct: 188 EPPKMPLPPKTSPTEPQLPPKERERRVPMPRLRKRIANRLKDSQNTFAMLTTFNE 242


>02_03_0404 +
           18648632-18648669,18649319-18649379,18649449-18649476,
           18649787-18649861,18649929-18649984,18650085-18650129,
           18650224-18650475,18650586-18650680,18651114-18651204,
           18651356-18651466,18651556-18651750,18651827-18652018
          Length = 412

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +1

Query: 367 EQRVKMNRMRQRIAQRLKDAQNTNAMLTTFNE 462
           E+RV M R+R+RIA RLKD+QNT AML TFNE
Sbjct: 183 ERRVPMPRLRKRIANRLKDSQNTFAMLITFNE 214


>09_01_0019 + 403078-404211
          Length = 377

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 273 SGSDTSRSSHRNSHCESSTSGLQQGDRRHANGTAR*NE 386
           S  D  RSS R  H +S +SG   GD RH  G  R  E
Sbjct: 334 SADDRKRSSRRRRHRKSESSG-SDGDERHGQGAKRSKE 370


>11_01_0319 -
           2396835-2396951,2397035-2397105,2397219-2397297,
           2397417-2397458,2397670-2397723,2397836-2397868,
           2397959-2398039,2398144-2398230,2398313-2398388,
           2398633-2398808,2398912-2399034,2399249-2399361,
           2399521-2399632,2400054-2400273,2401986-2402314,
           2402408-2402713,2403580-2403878,2404079-2404181,
           2404266-2404369,2404840-2404906,2404911-2405076,
           2405241-2405956
          Length = 1157

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +3

Query: 282 DTSRSSHRNSHCES-STSGLQQGDRRHANGTAR*NESHASTHRSTVEGRSEHER 440
           DT R   R+   ES S+SG     RRH +  +        +HR    G  E  R
Sbjct: 29  DTRRHRRRSPSSESCSSSGDDDRSRRHRHDESSRRRQRDQSHRRDRGGHDERRR 82


>08_02_1160 -
           24793708-24794796,24794888-24794951,24795028-24795146,
           24795496-24795612,24796365-24796406,24797342-24797506,
           24797806-24797898,24798190-24798291,24798360-24798501,
           24799301-24799651,24799741-24799839,24800019-24800230,
           24800394-24800429
          Length = 876

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +3

Query: 276 GSDTSRSSHRNSHCESSTSGLQQGDRRHANGTAR*NESHASTHRST 413
           GSD S SS   S CE  T  +   +  H    A  +   A   + T
Sbjct: 656 GSDMSISSSDKSDCEKQTETMSNSEHGHTGSEAHDHVGSAPVEQPT 701


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.129    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,062,132
Number of Sequences: 37544
Number of extensions: 109745
Number of successful extensions: 399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)