Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O20
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    28   1.3  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.1  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   4.0  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    26   4.0  
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    26   5.3  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   5.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.3  

>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 385 PTKEITKKWIEESWNFWQEIMMSP 456
           PTK I    +E +W  W EI+ SP
Sbjct: 423 PTKFIRYDEVEYAWKIWDEILDSP 446


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 361 RPGPSFKGPTKEITKKWIEESWNFWQE 441
           +P PS+ G + ++  KW+  S N  ++
Sbjct: 15  KPVPSYSGDSSQLPSKWLRSSKNMLED 41


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 454 PDSLNAGIMPLPTYIFSKENYHVTRNHLIENIVPIYRAVENDELTL 591
           P S N     +P+Y    + +  TR+HL E I+  +  ++N   TL
Sbjct: 273 PSSTNVAFFGVPSYENVLKAFSETRSHLTE-ILSAFELMDNTSQTL 317


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 297 CDNHSRRFWRTNDQLCRSWDIQTWAEFQRSD*RNNQEMDRRVMEF 431
           CD      WRT D+  R+ D Q + ++  +D R   E+ R+  ++
Sbjct: 88  CDYAEDNLWRTTDEEKRALDRQNFDQY--NDLRRAAEVHRQARQY 130


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 502 SKENYHVTRNHLIENIVPIYRAVENDELTL 591
           +KENY ++ N L+ +  PI      ++LTL
Sbjct: 243 AKENYQISPNPLLVSPTPITSEPHKEDLTL 272


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 172 IPIAFYKA*LRDTRVYLSFNRTNGH 98
           +PI F K  L+D   YLSF  + GH
Sbjct: 654 LPITFPKK-LKDNPAYLSFRSSRGH 677


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 110  HQWARQTTLTVGRYAERWQTKHNRMQIVFTP 18
            + W R    T  R A+ W+ +HN ++ +F P
Sbjct: 1158 YTWFR-AIFTTQRVAKGWKLEHNPVRRIFAP 1187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,040
Number of Sequences: 5004
Number of extensions: 50659
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)