Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O20
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.16 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.47 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   5.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +1

Query: 430 FWQEIMMSPDSLNAGIMPLPTYIFSKENYHVTRNHLIENIVPIYRAVENDELTLCGEGWK 609
           ++   +M  DS++   M     IF  + +   R  L EN+   YR +E D L      W+
Sbjct: 64  YFHVTVMGLDSIDENSMTYAADIFFAQTWKDNRLRLPENMTSEYRLLEVDWLK---NMWR 120

Query: 610 YGSYFLTLK 636
             S+F   K
Sbjct: 121 PDSFFKNAK 129


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 430 FWQEIMMSPDSLNAGIMPLPTYIFSKENYHVTRNHLIENIVPIYRAVENDEL 585
           ++   ++S DS+N   M     IF  +++  +R  L EN+   YR ++ D L
Sbjct: 33  YFHVTVLSIDSINEESMTYVADIFLAQSWRDSRLRLPENMSEDYRILDVDWL 84


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 573 FNRSIYRYNIFNQMISSHVVI 511
           +N   +RY I  ++ S H+V+
Sbjct: 242 YNTKFFRYRITPELYSEHLVV 262


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 526  RNHLIENIVPIYRAVENDELTLCGEGWKYGSYFLTLK 636
            RN+  +++V   RAV+  E+++   G  YG    TL+
Sbjct: 1041 RNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLE 1077


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 333 RLFAKSVGYDCHICIP*FFL*KLSYCGPDHSSTYY 229
           R+    VG  CH  I    + +L +CGP+    Y+
Sbjct: 4   RMTGTWVGGFCHSIIQIPVIIQLPFCGPNVIDHYF 38


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 400 TKKWIEESWNFWQEIMMSPD 459
           T  W+E+ WN + ++  +PD
Sbjct: 69  TNVWVEQEWNDY-KLKWNPD 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,298
Number of Sequences: 438
Number of extensions: 3599
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)