Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O19
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 103 3e-23
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 88 1e-18
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 72 5e-14
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 27 1.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.7
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 4.7
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 8.3
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 8.3
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 103 bits (246), Expect = 3e-23
Identities = 47/93 (50%), Positives = 63/93 (67%)
Frame = +3
Query: 219 KKGDLLHMHYTGILDDGTEFDSSVSRGTPLTFTLGHGQVIKGWDQGLMGMCEGEQRKLVI 398
K GD + MHYTG L +G +FDSSV RG+P T+G GQ+I+GWD+G+ M GE+ KL I
Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77
Query: 399 PPELAYGEAGAPPKIPKSATLIFHVDLVKIERK 497
P+ YG G P IP ++TL+F V+L+ I K
Sbjct: 78 TPDYGYGPRGFPGLIPPNSTLLFDVELLAINDK 110
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 87.8 bits (208), Expect = 1e-18
Identities = 41/88 (46%), Positives = 58/88 (65%)
Frame = +3
Query: 225 GDLLHMHYTGILDDGTEFDSSVSRGTPLTFTLGHGQVIKGWDQGLMGMCEGEQRKLVIPP 404
G + M Y G L++G FD + ++G P F LG G+VI+GWD G+ GM EG +RK+ IP
Sbjct: 275 GKKVEMRYIGKLENGKVFDKN-TKGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPA 333
Query: 405 ELAYGEAGAPPKIPKSATLIFHVDLVKI 488
+AYG P IPK++TL+F V LV++
Sbjct: 334 PMAYGNQSI-PGIPKNSTLVFEVKLVRV 360
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 72.1 bits (169), Expect = 5e-14
Identities = 37/91 (40%), Positives = 55/91 (60%)
Frame = +3
Query: 216 SKKGDLLHMHYTGILDDGTEFDSSVSRGTPLTFTLGHGQVIKGWDQGLMGMCEGEQRKLV 395
+K+ + M Y G L +G FD +++ G P TF LG +VIKGWD G++GM G +R +
Sbjct: 273 AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIH 331
Query: 396 IPPELAYGEAGAPPKIPKSATLIFHVDLVKI 488
IP +AYG P IP ++ L+F V L+ +
Sbjct: 332 IPAAMAYGSKRL-PGIPANSDLVFDVKLLAV 361
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -3
Query: 223 FLLLIVHVEGRFFIPICNFFVVLPITTWDITFMNTIINKRTLQTVIGVGFI 71
F++LI+ F++ I F + T +T+M ++ + LQT++ V F+
Sbjct: 300 FIVLILSSLSNFYLNIATFTQIK--VTSPVTYMISVSARSILQTLLAVAFL 348
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 405 ELAYGEAGAPPKIPKSATLIFHVDLVKIERKD 500
EL Y +AG PP +PK A H+ E D
Sbjct: 86 ELDYNKAGDPPILPKQAKDDHHIKRSSSETAD 117
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 552 YNFHSSIKCTNETKF---TIHLFFQFLQDPHGK*VLQTLGFLVVLQLHHRPTLEELLISF 382
Y+ H + ET T L + +Q HG L TL +VV ++H R ++L++
Sbjct: 660 YSVHGEKSISKETLLEFCTTGLLLRRIQQ-HGLGFLSTLSCVVVDEVHERSIENDILLTL 718
Query: 381 VHL 373
+ L
Sbjct: 719 LKL 721
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 399 PPELAYGEAGAPPKIPKSATLIFHVDLVKIERKDEL 506
P + +AG P K+PK+ T +DL K +L
Sbjct: 715 PRKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKKDL 750
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/61 (19%), Positives = 31/61 (50%)
Frame = +3
Query: 63 FIIMNPTPITVCKVLLFIIVFMNVISHVVIGNTTKKLQIGIKKRPSTCTIKSKKGDLLHM 242
+ +M+ +T+ + + ++ I + I ++ + +GI+ P++ + S K + LH
Sbjct: 573 YTVMDAITLTLIQEHKLALEWVGNIMNDTIADSVITILLGIESSPASVKLTSHKCNHLHS 632
Query: 243 H 245
H
Sbjct: 633 H 633
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,923
Number of Sequences: 5004
Number of extensions: 56342
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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