Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O18
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.9  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
          protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 76 TLSSGFGFVSSGCL 35
          T+ +GFG + SGC+
Sbjct: 43 TMQTGFGMLESGCV 56


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 325 PS*VTGASGFVALPTSMGLSGEADFSETSVGTSF 224
           P+ V+  SGF  +P     S ++ FS+ ++  SF
Sbjct: 111 PAAVSYTSGFYHIPVIGISSRDSAFSDKNIHVSF 144


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 25  KLRPNTLKRQNQNQMIKSKQMKRHLNLNLQNQSLPTFL 138
           ++ PN LK  +++Q+IK        +   Q  + P FL
Sbjct: 474 QISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFL 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,527
Number of Sequences: 438
Number of extensions: 2041
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)