Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O16
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.003
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 33 0.024
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 33 0.032
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 33 0.042
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 33 0.042
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 29 0.52
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 29 0.69
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.69
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 28 0.91
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 28 0.91
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 28 0.91
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 28 1.2
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 2.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 2.1
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 27 2.8
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 2.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 2.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.8
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.7
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 3.7
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 4.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 4.8
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 26 4.8
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 26 4.8
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 25 6.4
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 6.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 6.4
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 6.4
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 8.5
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 25 8.5
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 8.5
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 16 KFIKNNSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQND 195
K I S KTD P K++ R K SKK+ + S SE E++S +++
Sbjct: 38 KEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESE 97
Query: 196 TSPRE 210
+S E
Sbjct: 98 SSSSE 102
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/59 (22%), Positives = 34/59 (57%)
Frame = +1
Query: 25 KNNSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTS 201
+++SD + E S ++ + + + +++ E ++ + KK+ SSS+ E++S+ + S
Sbjct: 161 ESSSDSSSESSSSESESESSSSE-SEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSES 218
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 33.5 bits (73), Expect = 0.024
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +1
Query: 157 SSSEDEANSEQNDTSPREKPRALFGQDDIEGQDIFKFK---LRYTKNDLQRKVQTAINSS 327
SS +D+ NSE ND SP D D+F + ++ T+NDL T +
Sbjct: 390 SSKDDDNNSESNDMSPHNDAETRADDDAYLMGDLFNQEEEDIQDTENDLLNANYTLL--- 446
Query: 328 PKVTDSPVLTPKKLLIHSINKV 393
P TD P L + ++K+
Sbjct: 447 PLTTDKSGTRPSTTLQYELHKI 468
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 33.1 bits (72), Expect = 0.032
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +1
Query: 160 SSEDEANSEQNDTSPREKPRALFGQDDIEGQDIFKFKLR----YTKNDLQRKVQTAINSS 327
++EDE S Q+D + P + + ++DI G DI+ F L+ D R+ + +++ S
Sbjct: 790 NAEDE--SPQSDEVESQTPPSGYSENDIGGTDIYPFALQGAALAAAKDFSRR-EASLSDS 846
Query: 328 PKVTDSPVLTPKKLLIHS 381
+L KK L HS
Sbjct: 847 QSAASMDMLPMKKKLSHS 864
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 32.7 bits (71), Expect = 0.042
Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 4/144 (2%)
Frame = +1
Query: 13 LKFIKNNSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQN 192
L ++ + D D PTK+ + TK + L S N K SS + E+
Sbjct: 1195 LSVVREHPDLFVVKTDQPTKRKYNRKAPTKSSTRQTTLDGS-ISNTKKSSRTKKKKEEET 1253
Query: 193 DTSPREKPRALFGQDDIEGQ----DIFKFKLRYTKNDLQRKVQTAINSSPKVTDSPVLTP 360
+ P G+D++E + + K LR +T NS + LT
Sbjct: 1254 NRGDETSPEGTVGEDEVEEEPRQAEPPKRALRSNSGKAASNKRTTRNSMKTHSAMDTLTA 1313
Query: 361 KKLLIHSINKVCEETPKHVKDVIK 432
L ++ + E K D +K
Sbjct: 1314 VAALDAELDNMSNEKAKEEVDHVK 1337
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 32.7 bits (71), Expect = 0.042
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 28 NNSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSE 168
N++ + DE+ +P KK+ +K TK SE + + KK N K E
Sbjct: 165 NSASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKKNNTKKQKVE 211
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.52
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 34 SDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQ--NDTSPR 207
++K E+P S TKK+ RT + +K+ +K P++K +Q S+ S D S
Sbjct: 578 TNKRRELPSSLTKKNTRTPQRSKE----VKKVPARKLSQSTKKSDKNTQSTLLFYDPSST 633
Query: 208 EKPRALFGQDD 240
+ + L +DD
Sbjct: 634 TEAQYLDNEDD 644
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 28.7 bits (61), Expect = 0.69
Identities = 21/101 (20%), Positives = 42/101 (41%)
Frame = +1
Query: 91 KITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSPREKPRALFGQDDIEGQDIFKFK 270
KI++K L + N+ +S + + T + ++ + D+ QD+ +
Sbjct: 63 KISEKKHSSLPIKRKNTFNESSTSFSPFTKAHKEITDDLKPDKSFTRKSDLNSQDMPEVC 122
Query: 271 LRYTKNDLQRKVQTAINSSPKVTDSPVLTPKKLLIHSINKV 393
+ T DL R T + TDS ++ K + +S + V
Sbjct: 123 FQETSKDLCRSSSTQHLLDHQTTDSTIIDMKPVSTNSKSDV 163
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 134 VRSKIRS*VLQKMKLIVNRMTHLPVKNL 217
+ S IRS + +K K+++ THL V N+
Sbjct: 965 ISSLIRSLLAKKKKILLTSFTHLAVDNI 992
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 0.69
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 28 NNSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTS 201
N+S + +S + + + SE S + SSSE E++SE ND+S
Sbjct: 126 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 183
Score = 28.7 bits (61), Expect = 0.69
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 28 NNSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTS 201
N+S + +S + + + SE S + SSSE E++SE ND+S
Sbjct: 180 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 237
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 7 GRLKFIKNNSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSE 186
G+ K K + +K+++ +KK K S S S SSSE E++SE
Sbjct: 67 GKHKKTKESLEKSNDDSQKISKKGAPPEKAHS--SSEASGSGSSSDESDSSSSESESSSE 124
Query: 187 QNDTS 201
ND+S
Sbjct: 125 DNDSS 129
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/75 (22%), Positives = 29/75 (38%)
Frame = +1
Query: 31 NSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSPRE 210
+SD + DS ++ S+ + S S S+ + SSS+ E+ S D+
Sbjct: 143 DSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSS 202
Query: 211 KPRALFGQDDIEGQD 255
+ EG D
Sbjct: 203 SSSDSESESSSEGSD 217
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.91
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 40 KTDEIPDSP-TKKSNRTRKITK--KYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSPRE 210
KT++ P KK N KI+K K E+ K K+ KLS + + N+ +++ RE
Sbjct: 91 KTEKAKVKPKAKKKNSKEKISKSSKQDEH-KTDVHKESVSKLSKNLESRNNRDENSAKRE 149
Query: 211 K 213
K
Sbjct: 150 K 150
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 0.91
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +1
Query: 58 DSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSPREKPRALFGQD 237
D K + K+ KK + SP KK+N S S + + QND ++K +L +
Sbjct: 16 DGSMNKRVKVAKLPKKVDSF---SPKKKKNTTSSGSSESDSMSQND---KKKDSSL---N 66
Query: 238 DIEGQDIFKFKLRYTKND 291
+ E +D F ++ND
Sbjct: 67 ESEDEDFAGFGESASEND 84
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 28.3 bits (60), Expect = 0.91
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 31 NSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSP-- 204
N+ D + +NR + YS + + SPS Q +KLS S S+Q +
Sbjct: 682 NTPAADSTKSGTIQPTNRNGE-GLSYSPHQQFSPSAPQAEKLSRSMSPFVSQQQQLNQPV 740
Query: 205 REKPRALFGQDDIEGQDIFKFKL 273
KP L ++ G + K +L
Sbjct: 741 SNKPDGLTQNKEVTGMPLNKEEL 763
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 27.9 bits (59), Expect = 1.2
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +1
Query: 10 RLKFIKNNSDK----TDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSE-DE 174
RLK ++SD ++ P+S K ++T K + + + KK+N+K+ SS+ +
Sbjct: 63 RLKGSNSDSDSPHHASNPHPNSRQKHQHQTSKSVPRSQRFSRELNVKKENKKVFSSQTTK 122
Query: 175 ANSEQNDTSPREKPRALFGQDDIEGQDIFKFKLRYTKNDLQRKVQ--TAINSSPKVTDSP 348
S + T+ ++ D + KL T+N+++ + Q +++S K SP
Sbjct: 123 RQSRKQSTALTTNDTSIILDDSLHTN---SKKLGKTRNEVKEESQKRELVSNSIKEATSP 179
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 28 NNSDKTDEIPDSPTKKSNR 84
+NSD D+IPD+P+ +N+
Sbjct: 870 SNSDSDDQIPDTPSASANQ 888
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 148 QKLSSSE--DEANSEQNDTSPREKPRALFGQDD 240
QKLS E E E+ + +PRE P FG DD
Sbjct: 666 QKLSGGEKDQEMVEEELEDAPREIPITSFGDDD 698
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = +1
Query: 31 NSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSPRE 210
++ +DE KK + +K KK S L P K+ +K++ + + + +++ S +
Sbjct: 156 DASSSDEAKREKRKKHSSKKKSKKKTSTGSALDP--KKLEKITKKKKKEHKKKDKESSSK 213
Query: 211 KPRALFGQDDIEGQDIFKFKLR 276
K ++ G D E + K KL+
Sbjct: 214 KRKS--GSSDKEEKKKKKIKLK 233
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 97 TKKYSEYLKLSPSKKQNQKLSSS 165
TKKYS KL+P K +++KL S+
Sbjct: 15 TKKYSRGRKLNPKKIKDKKLRSN 37
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 100 KKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSPREKPRALFG 231
K++ E+ K KK+N ++SSS A+S + D +LFG
Sbjct: 699 KEHKEHKK-DKQKKKNDQISSSSKSASSFKKDRDKESIFGSLFG 741
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 88 RKITKKYSEYLKLSPSKKQNQKLSSSEDEAN 180
RK+ K + E L SKK N+ L +++++++
Sbjct: 644 RKLLKSFQEVAPLVSSKKMNENLKAAKNQSS 674
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 76 SNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSPREKPRALFGQDDIE 246
S R KIT SE L L+ + ++ S + ++Q + + REK AL + D E
Sbjct: 999 STREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLEDAVREKDSALSFKKDYE 1055
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 309 LYFSL*VIFSVAQLELENILT 247
L FS+ ++FS+ Q EL N+LT
Sbjct: 368 LIFSIMLLFSIGQEELANVLT 388
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 235 DDIEGQDIFKFKLRYTKNDLQRKVQTAINSSPKVTDSPVLTPK 363
D + G+ + K +L+ + R++ A + K +PV PK
Sbjct: 19 DPVTGEQVSKTELKKREKQRARELAKAKKQAEKAASAPVAAPK 61
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 316 INSSPKVTDSPVLTPKKLLIHSINKVCEETPKH 414
INS K +S L K LL NKVC + ++
Sbjct: 2 INSKSKKKESNALVLKSLLREPYNKVCADCKRN 34
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 67 TKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSPREKPRALFGQD 237
T S+ RK ++ L S+ N+K +S+E +++S +TS K + G+D
Sbjct: 613 TASSDSFRKYANTLNDLRHLKSSR--NRKATSNETQSSSNSTETSKLSKNVSESGKD 667
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 7 GRLKFIKNNSDKTDEIPDS 63
GR++FI+ N++ D+IPD+
Sbjct: 165 GRVEFIEQNAEILDKIPDN 183
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Frame = +1
Query: 46 DEIPDSPTK------KSNRTRKITKKYSEYLKLS-PSKKQNQKLSSSEDEA 177
D IPD+PTK K R IT + E L+ PS+ N K+S + A
Sbjct: 386 DSIPDTPTKIITNINKLKRNYTITNNWLENLQQKIPSEVDNGKVSGLQYSA 436
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 508 LVQNQCYYQKNH*IHHHSPLLEQY 437
L Q Y + + +HH SPL EQ+
Sbjct: 53 LRQGSLIYLQRYIVHHWSPLFEQF 76
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 223 LFGQDDIEGQDIFKFKLRYTKNDLQRKVQTAINSSPKVTDSPVLTPKKLLIHSIN 387
+FG+ ++E ++ + D + + Q++ SS V +S TPKK ++H N
Sbjct: 334 VFGESELEEKNASTKTENDSNEDDKEECQSSSTSS--VPESTASTPKKRILHVQN 386
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 127 SPSKKQNQKLSSSEDEANSEQNDTSPREKPRAL 225
+PS QN+K+SS + + + P ++PRA+
Sbjct: 1266 TPSIPQNEKISSLARDFIEQCFERDPEQRPRAV 1298
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 6.4
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +1
Query: 91 KITKKYSEYLKLSPSKKQNQKLSSSEDEANSEQNDTSPREKPRALF---GQDD-IEGQDI 258
K+ + +E + PSK QKL + E + E++D S + + F DD + G D
Sbjct: 235 KLNLRSNELVYPPPSKDLLQKLLALEKDGQVEKSDCSKNTQLKPSFLPKNTDDLLNGTDD 294
Query: 259 FKFKLRYTKNDLQ-RKVQT-AINSSPKVTDSPVLTP 360
LR K + K+++ ++ + ++++ TP
Sbjct: 295 NNIVLREVKVSFENEKIESDDLDKNEEISEGEEYTP 330
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +1
Query: 109 SEYLKLSPSKKQNQKLSSSEDEANSEQNDTS 201
SE +L+ S+ + Q SSSE+E++ E++ +S
Sbjct: 20 SEENRLTSSRLKKQDDSSSEEESSEEESASS 50
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = +1
Query: 139 KQNQKLSS---SEDEANSEQNDT 198
K N KL +EDEA EQNDT
Sbjct: 22 KDNDKLMDQGVTEDEAEQEQNDT 44
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +1
Query: 1 ARGRLKFIKNNSDKTDEIPDSPTKKSNRTRKITKKYSEYLKLSPSKKQNQKLSSSEDEAN 180
A+G +SD+ + KK N +K + + S SK N S++D
Sbjct: 128 AKGSPSSENKDSDRNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDL 187
Query: 181 SEQNDTSPR 207
+++++ S +
Sbjct: 188 ADESELSKK 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.126 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,343
Number of Sequences: 5004
Number of extensions: 33054
Number of successful extensions: 169
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
- SilkBase 1999-2023 -