Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O16
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.75 
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 487 YQKNH*IHHHSPLLEQ 440
           YQ +H +HHH  L +Q
Sbjct: 70  YQSHHHLHHHQVLYQQ 85


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 301 KVQTAINSSPKVTDSPVLTPKKLLIH-SINK 390
           K +T +N S KVT     +  +LL+H S NK
Sbjct: 93  KTETQVNDSLKVTRLYEFSDNELLVHISTNK 123


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 586 ISFEVCFPPL 557
           +SF +CFPPL
Sbjct: 192 LSFVICFPPL 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.126    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,666
Number of Sequences: 438
Number of extensions: 1846
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)