Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O15
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0264 + 13581244-13581333,13581526-13581806,13582022-13582253     29   2.3  
11_06_0016 - 19284810-19284926,19285527-19286879                       29   3.1  
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    28   4.0  
04_03_0314 - 14238620-14240128                                         27   9.3  

>06_02_0264 + 13581244-13581333,13581526-13581806,13582022-13582253
          Length = 200

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 36  RIKGKDQQASASQLRMKMMKRVNQRVRSQKCQTTLKAKPLHPRRMRRSEPP 188
           R KG+ QQA+A Q  +KM KR      S    T     PL+     +S+ P
Sbjct: 17  RCKGRQQQAAALQQVVKMPKRTLLTYYSSLSNTNTSDPPLNNEIASQSKRP 67


>11_06_0016 - 19284810-19284926,19285527-19286879
          Length = 489

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 51  DQQASASQLRMKMMKRVNQRVRSQKCQTTLKAKP-LHPRRMRRSEPPVSPRDRRADGKLS 227
           DQ+AS    + +     +Q+  S   Q +L ++P LHP   R   PP+ P    A    +
Sbjct: 19  DQEASLCHSKGRKPPTFSQQPSSLSSQFSLPSRPPLHPVGDRAIHPPMPPASAAAGDGAA 78

Query: 228 P 230
           P
Sbjct: 79  P 79


>06_03_0478 -
           21259376-21259465,21259862-21259924,21260025-21260066,
           21260180-21260461,21261084-21261587,21261973-21261981,
           21262122-21262196,21262375-21262449,21262557-21263494,
           21263577-21263607,21263694-21263979,21264691-21264905,
           21265329-21265437,21265556-21265611,21265730-21265822,
           21266348-21266393,21266496-21267221,21267489-21267550,
           21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 36  RIKGKDQQASASQLRMKMMKRVNQRVRSQKCQTTLKAKPLHPRRMRRSE-PPVSPRDRR 209
           R + +D++    + R + ++R  +R+R ++ +   + +  HP   RR   PP +P DRR
Sbjct: 344 RERERDRERLRERERERELERERERLRERRMKERERDRK-HPADSRREHTPPRTPGDRR 401


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 138 LKAKPLHPRRMRRSEPPVS 194
           L  +P+HPRR+R   PP S
Sbjct: 14  LSPQPIHPRRVRLPNPPPS 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,909,782
Number of Sequences: 37544
Number of extensions: 148891
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)