Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O14
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...   122   2e-29
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    51   7e-08
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.0  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   5.5  

>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score =  122 bits (294), Expect = 2e-29
 Identities = 58/67 (86%), Positives = 62/67 (92%)
 Frame = +3

Query: 186 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 365
           E VYISSLALLKML+HGR G PMEVMGLMLGEFVDD+TVRV+DVFAMPQ+GTGVSVEAVD
Sbjct: 28  ECVYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVD 87

Query: 366 PVFQAKM 386
           PVFQ  M
Sbjct: 88  PVFQKNM 94


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 50.8 bits (116), Expect = 7e-08
 Identities = 26/56 (46%), Positives = 39/56 (69%)
 Frame = +3

Query: 192 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEA 359
           V IS++ALLKML+H   G+P+EVMG + G+ V+  ++ ++D FA+P  GT   V A
Sbjct: 35  VKISAVALLKMLRHVSQGMPLEVMGYVQGK-VEGASLIILDSFALPVEGTETRVNA 89


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 273 LGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDP 368
           +G++ DD+   V  VF +P+T   +   ++DP
Sbjct: 142 MGDWQDDFQDAVNSVFGLPETPKTIEESSLDP 173


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 149 RLGKASHTTPKT*KAIHNNLLL*CPNAIYHLLLVILFVQIK 27
           RLGK  HT  KT ++ +  L L   +A+ + ++++   +I+
Sbjct: 428 RLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVILAHGEIE 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,505
Number of Sequences: 5004
Number of extensions: 31336
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)