Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O14
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 129 9e-31
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 129 9e-31
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 61 3e-10
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 53 7e-08
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 28 3.0
01_06_1172 - 35115248-35115874 28 3.0
05_01_0354 + 2770515-2770655,2770767-2771380,2772152-2772341,277... 27 3.9
12_02_0152 - 14477844-14478085,14478201-14478285 27 5.2
10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387... 27 5.2
07_03_0383 - 17476271-17479228,17480466-17480750 27 6.9
04_04_1220 + 31843628-31844755 27 6.9
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465 26 9.1
05_02_0024 - 5702501-5702664,5703219-5703393,5703716-5704099,570... 26 9.1
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 129 bits (311), Expect = 9e-31
Identities = 62/67 (92%), Positives = 64/67 (95%)
Frame = +3
Query: 186 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 365
EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRV+DVFAMPQ+GTGVSVEAVD
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
Query: 366 PVFQAKM 386
VFQ M
Sbjct: 87 HVFQTNM 93
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 129 bits (311), Expect = 9e-31
Identities = 62/67 (92%), Positives = 64/67 (95%)
Frame = +3
Query: 186 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 365
EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRV+DVFAMPQ+GTGVSVEAVD
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
Query: 366 PVFQAKM 386
VFQ M
Sbjct: 87 HVFQTNM 93
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 61.3 bits (142), Expect = 3e-10
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +3
Query: 186 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQ-TGTGVSVEAV 362
+ Y+S LALLK+L H P+ MG++LGE VD ++VRV+D F +P+ G G +A+
Sbjct: 24 QTAYVSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLPRCAGGGAFTQAI 83
Query: 363 DP 368
DP
Sbjct: 84 DP 85
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 53.2 bits (122), Expect = 7e-08
Identities = 30/54 (55%), Positives = 36/54 (66%)
Frame = +3
Query: 198 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEA 359
IS+LALLKM+ H RAG +EVMGLM G+ D V V+D FA+P GT V A
Sbjct: 54 ISALALLKMVVHARAGGTIEVMGLMQGKCEGDAIV-VMDAFALPVEGTETRVNA 106
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 192 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDPV 371
V + LA+LK++KH P V G +LG V + V + F P +A
Sbjct: 35 VQMEGLAVLKIIKHCEEFAPALVTGQLLGLDVGS-VLEVTNCFPFPMREDDEEADADGAN 93
Query: 372 FQAKM 386
+Q +M
Sbjct: 94 YQLEM 98
>01_06_1172 - 35115248-35115874
Length = 208
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +3
Query: 234 GRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 365
G EV + LGEF D VRV +P+ G G V VD
Sbjct: 115 GSPAAAAEVCAICLGEFADGEKVRV-----LPRCGHGFHVRCVD 153
>05_01_0354 +
2770515-2770655,2770767-2771380,2772152-2772341,
2772570-2772634,2772719-2773214
Length = 501
Score = 27.5 bits (58), Expect = 3.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 92 NYYGSPFTSWGWYGWP 139
N++ PF W ++GWP
Sbjct: 238 NHFDIPFPDWSFWGWP 253
>12_02_0152 - 14477844-14478085,14478201-14478285
Length = 108
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 228 STFSKEPVKKCTLVQQ 181
STF+ +P KCTLVQQ
Sbjct: 89 STFNCDPAGKCTLVQQ 104
>10_01_0352 -
3870921-3871272,3871383-3871479,3871541-3871621,
3874854-3875028,3875650-3875661
Length = 238
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 185 SSVHCWGIGRRRRLGKAS 132
SS H W G RRR+G AS
Sbjct: 193 SSTHAWRPGARRRMGAAS 210
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 74 LDIKVINYYGSPFTSWGWYGWPFPGAS 154
+ IK+ NYYG F SW FPG S
Sbjct: 738 VSIKMANYYGHEFPSW----LSFPGLS 760
>04_04_1220 + 31843628-31844755
Length = 375
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 76 GHQSNKLLWIAFYVLGVVWLAFPRRLRRPMPQQWTL 183
G + L F +G W FPR + RP +QW L
Sbjct: 114 GESVQRSLTHRFDTVGAFW-GFPRFMERPRLRQWLL 148
>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
Length = 1058
Score = 26.2 bits (55), Expect = 9.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 74 LDIKVINYYGSPFTSW 121
+ +K+ NYYG F SW
Sbjct: 732 VSLKIANYYGDQFPSW 747
>05_02_0024 -
5702501-5702664,5703219-5703393,5703716-5704099,
5705787-5705864,5706015-5706140
Length = 308
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 137 PFPGASADRCPSSGH 181
P GAS+ RCPS GH
Sbjct: 21 PSTGASSRRCPSCGH 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,115,251
Number of Sequences: 37544
Number of extensions: 201912
Number of successful extensions: 453
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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