Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O14
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...   132   8e-32
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...   109   9e-25
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    51   2e-07
Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr...    27   3.5  
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele...    27   3.5  
U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal p...    27   4.6  
AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.      27   4.6  

>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score =  132 bits (319), Expect = 8e-32
 Identities = 64/67 (95%), Positives = 65/67 (97%)
 Frame = +3

Query: 186 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 365
           E VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTV VIDVFAMPQ+GTGVSVEAVD
Sbjct: 31  ETVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVD 90

Query: 366 PVFQAKM 386
           PVFQAKM
Sbjct: 91  PVFQAKM 97


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score =  109 bits (261), Expect = 9e-25
 Identities = 49/66 (74%), Positives = 59/66 (89%)
 Frame = +3

Query: 186 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVD 365
           E V ISSLALLKML+H R+G+P+EVMGLMLG+FVDDYT+ V DVFAMPQ+GT V+VE+VD
Sbjct: 27  ETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVD 86

Query: 366 PVFQAK 383
           PV+Q K
Sbjct: 87  PVYQTK 92


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 25/58 (43%), Positives = 38/58 (65%)
 Frame = +3

Query: 186 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEA 359
           +Q+ IS++ALLKM  H + G  +E+MGL+ G  +D  +  ++DVFA+P  GT   V A
Sbjct: 54  KQIKISAIALLKMTMHAKRGGNLEIMGLLQGR-IDANSFIILDVFALPVEGTETRVNA 110


>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 92  NYYGSPFTSWGWY 130
           NY+G+ F  WGW+
Sbjct: 89  NYFGAMFAKWGWF 101


>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 164 CPSSGHC*TSVHFFTGSFENVETWSCWCTNGSYGAYARRVC 286
           C   G C  +   + G    +ET+ C C  G  GA+  R C
Sbjct: 23  CGREGACSVNGKCYNGKL--IETYWCRCKKGFGGAFCEREC 61


>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
           protein F02A9.6 protein.
          Length = 1295

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 164 CPSSGHC*TSVHFFTGSFENVETWSCWCTNGSYGAYARRVC 286
           C   G C  +   + G    +ET+ C C  G  GA+  R C
Sbjct: 23  CGREGACSVNGKCYNGKL--IETYWCRCKKGFGGAFCEREC 61


>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
           C.elegans glp-1 gene,complete cds. ).
          Length = 1295

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 164 CPSSGHC*TSVHFFTGSFENVETWSCWCTNGSYGAYARRVC 286
           C   G C  +   + G    +ET+ C C  G  GA+  R C
Sbjct: 23  CGREGACSVNGKCYNGKL--IETYWCRCKKGFGGAFCEREC 61


>U67953-5|AAL13330.2|  287|Caenorhabditis elegans Male abnormal
           protein 7 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 236 SCWCTNGSYGAYARRVCG*LHSSC 307
           SC C  G  G Y  R C  ++ SC
Sbjct: 55  SCTCATGWMGRYCHRKCRNIYKSC 78


>AY742796-1|AAW59416.1|  287|Caenorhabditis elegans MAB-7 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 236 SCWCTNGSYGAYARRVCG*LHSSC 307
           SC C  G  G Y  R C  ++ SC
Sbjct: 55  SCTCATGWMGRYCHRKCRNIYKSC 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,819,670
Number of Sequences: 27780
Number of extensions: 182354
Number of successful extensions: 418
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)