Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O14
         (387 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   2.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   8.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 148 RLRRPMPQQWTLLNKCTF 201
           R   P P+ W  L+KC F
Sbjct: 412 RRTSPPPEDWKPLDKCYF 429


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +2

Query: 107 PFTSWGWYGWPF 142
           P  +WG+Y +P+
Sbjct: 209 PAANWGYYAYPY 220


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 240 AGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEA 359
           AG+PM  M L LG+ +   TV  + VF +     G+   A
Sbjct: 30  AGIPMFFMELALGQML---TVGGLGVFKIAPLFKGIGYAA 66


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 AGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGV 347
           AGVPM +M L LG+ +   T+  + VF +     G+
Sbjct: 68  AGVPMFLMELSLGQMM---TIGGLGVFKIAPIFKGI 100


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 AGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGV 347
           AGVPM +M L LG+ +   T+  + VF +     G+
Sbjct: 121 AGVPMFLMELSLGQMM---TIGGLGVFKIAPIFKGI 153


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 165 HRSAEAPGKGQPYHP 121
           H+S +AP +G P +P
Sbjct: 28  HQSPQAPQRGSPPNP 42


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 80  CPNAIYHLLL 51
           CP AIY L+L
Sbjct: 863 CPEAIYQLML 872


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 88  NKLLWIAFYVLGVVWLAF 141
           +K +    Y   ++WLAF
Sbjct: 705 SKFIGFTMYTTCIIWLAF 722


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 88  NKLLWIAFYVLGVVWLAF 141
           +K +    Y   ++WLAF
Sbjct: 795 SKFIGFTMYTTCIIWLAF 812


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,823
Number of Sequences: 438
Number of extensions: 2146
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)