Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O13
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 144 4e-36
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 143 7e-36
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 143 7e-36
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 30 0.15
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 26 2.4
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 3.1
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 25 3.1
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 25 4.1
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 24 7.2
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 24 9.5
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 24 9.5
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (349), Expect = 4e-36
Identities = 65/105 (61%), Positives = 86/105 (81%)
Frame = +2
Query: 5 EVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHVKDST 184
+VND+++L++ TNKI FIKFD+ M+TGGRN+GRVGTIV RE H GSF+I+HVKD+
Sbjct: 155 KVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDAL 214
Query: 185 GHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERDKRIAAK 319
FATRL+NVF+IG+ K++ISLP+GKGV+L+I EERD+R A K
Sbjct: 215 DREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 143 bits (347), Expect = 7e-36
Identities = 65/105 (61%), Positives = 86/105 (81%)
Frame = +2
Query: 5 EVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHVKDST 184
+VND+++L++ TNKI FIKFD+ M+TGGRN+GRVGTIV RE H GSF+I+HVKD+
Sbjct: 155 KVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDAL 214
Query: 185 GHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERDKRIAAK 319
FATRL+NVF+IG+ K++ISLP+GKGV+L+I EERD+R A K
Sbjct: 215 DREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 143 bits (347), Expect = 7e-36
Identities = 65/105 (61%), Positives = 86/105 (81%)
Frame = +2
Query: 5 EVNDSVQLDISTNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHVKDST 184
+VND+++L++ TNKI FIKFD+ M+TGGRN+GRVGTIV RE H GSF+I+HVKD+
Sbjct: 155 KVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDAL 214
Query: 185 GHTFATRLNNVFIIGKGTKAYISLPRGKGVRLTIAEERDKRIAAK 319
FATRL+NVF+IG+ K++ISLP+GKGV+L+I EERD+R A K
Sbjct: 215 DREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 29.9 bits (64), Expect = 0.15
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 234 PLPIMNTLFNLVANVCPVESLTCTMSKEPGWRSR 133
P N + NV V+ +TC + + PGW+ R
Sbjct: 329 PQDAANNIIRYAQNVGAVDDITCLVVRLPGWKKR 362
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 2.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 62 KFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHVKDSTG 187
KF+ LC + G L R+G + E GS D+V + G
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVVETIEIGG 357
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 119 GTIVSRERHPGSFDIVHVKDSTGHTFATRLNN 214
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 7 GERLGAARHLHQQDHGLHQVRLRQPLHD 90
G LGA +H H + G H V P++D
Sbjct: 177 GPTLGAKQHSHSHEDGAHGVH-EHPVYD 203
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = +2
Query: 35 STNKIMDFIKFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHVKDSTG 187
S NKI+DF+K D NL + L ++ H + K G
Sbjct: 140 SKNKILDFLKSDKENLISGDDDQELIDEDELLDESAHDNVLKVPECKPEPG 190
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -1
Query: 205 PGRERVPGGVLDVHD--VEGAGVALARDDGADATQIP 101
PGRE PG V +H +E A + G T +P
Sbjct: 317 PGREAYPGDVFYLHSRLLERAAKMSPKHGGGSLTALP 353
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 23.8 bits (49), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 193 RVPGGVL-DVHDVEGAGVALARDDGADATQIP 101
R+ G VL D + VAL +DD DA ++P
Sbjct: 233 RLLGPVLNDKTKISSVNVALMKDDVGDAEKLP 264
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.8 bits (49), Expect = 9.5
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 172 DVH-DVEGAGVALARDDGADATQIPAAGDHAEVAGVELDEVHDL 44
D+H + + + L D+ + +I GD ++ VE+DE HD+
Sbjct: 45 DIHVRFQDSALPLGIDEN-ELDEIDINGDSKKLDSVEVDESHDV 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,061
Number of Sequences: 5004
Number of extensions: 22302
Number of successful extensions: 64
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -