Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O11
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   0.77 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.1  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   3.1  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   4.1  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   5.5  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   9.5  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    24   9.5  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   9.5  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 13/73 (17%), Positives = 31/73 (42%)
 Frame = +2

Query: 170  LFVWQDWALGVLYTKIVCALTMIGPDWSMRKAIEKGYRDGIREMDLKLILREVAAPIVCL 349
            L  +Q+W +G+   +++        +  + +  +  +RD      +  +L+ V  P    
Sbjct: 1092 LDAFQNWVIGLFMLRMIYFTVTSNEERFVSRLFQDAFRDRWTNPQILPLLKNVLIPFTSA 1151

Query: 350  LGLALAVPYAFAH 388
            L  A+ +P  F +
Sbjct: 1152 LIAAVVLPSVFTY 1164


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 7/134 (5%)
 Frame = -2

Query: 384 ANAYGTASASPSKHTIGAATXXXXXXXXXXXXXXXXPFSMALRI-LQSGPIIVSAHTIFV 208
           ++   ++S+S S  T  ++T                  SM+      S P   S+     
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSS 346

Query: 207 *STPRAQS-CHTNSTGDCSSGTRSGITNTSSRSKPXM-----SGIRPXXXXXXXXXXXXX 46
            S+P + S   T S+   SS   S ++++SS S   +     S  RP             
Sbjct: 347 SSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSH 406

Query: 45  XAHTPTRVASAPPS 4
            + + ++ +SAP S
Sbjct: 407 KSSSSSKSSSAPVS 420


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 307 KVHLSDTVPVALLD 266
           K+HL+DT+P+  LD
Sbjct: 317 KIHLADTIPLVFLD 330


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 249 GVCVRPSRRATGTVSERWTLSL 314
           G+ +RP+  ATG V   W+L L
Sbjct: 451 GILIRPNFAATGKVDLAWSLIL 472


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 296 LGYRPGSPSRWPYAYSSPGQSL*AHTLSSCKVHRGPSP 183
           LG   G   R P ++SSP  +   HT+ S  V+   SP
Sbjct: 246 LGSNSGLNPRSPNSFSSPLDNPALHTVDSTNVNGSLSP 283


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 295 SDTVPVALLDGLTHTPVRANHCERTHYLRVKYTEGPVL 182
           S  VP +    L+H  +    CE    +R  YT G  L
Sbjct: 387 SSYVPFSSGSSLSHVALHHYDCEPNFLMRAFYTAGATL 424


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 249 GVCVRPSRRATGTVSERWTLSLF 317
           G C  P  +    VSER TL LF
Sbjct: 327 GFCFSPDYQYLALVSERGTLKLF 349


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 138 HFASRWNNRQCCSYGRTGPSVYFTRR 215
           H   + +  Q C +   GP VYF  R
Sbjct: 256 HLLLQSSENQACKFFNIGPQVYFDPR 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,719
Number of Sequences: 5004
Number of extensions: 24756
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)