Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O11
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          27   0.058
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.18 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   3.8  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      21   3.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.0  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   8.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   8.7  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    20   8.7  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 0.058
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -1

Query: 370 HRQRKPQQAHDRRRHLAQNKLKVHLSDTV 284
           +RQ+  +Q    +RHLAQ+K+KV +++ V
Sbjct: 14  NRQQVMRQNMKLKRHLAQDKVKVRVAEEV 42


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = -1

Query: 178 YEQHWRLFQRDAKWNH*YQLEE*AXHERY*AEQSERCERSAGRTSRPHAHPRGERTA 8
           + QH  +  +  +     Q +    HE++   Q ++  ++A + S+P  HPR ++ A
Sbjct: 173 HTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQQQA 229


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 138 HFASRWNNRQ 167
           HF  RWNN Q
Sbjct: 6   HFCLRWNNYQ 15


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 138 HFASRWNNRQ 167
           HF  RWNN Q
Sbjct: 6   HFCLRWNNYQ 15


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 88  AEQSERCERSAGRTS 44
           AE  E+C+R  G+T+
Sbjct: 373 AEIKEKCDRRTGKTT 387


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 88  AEQSERCERSAGRTS 44
           AE  E+C+R  G+T+
Sbjct: 84  AEIKEKCDRRTGKTT 98


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 235 DWPGLEYA 258
           +WPGLE+A
Sbjct: 751 EWPGLEHA 758


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 298 LSDTVPVALLDGLTHTPV 245
           +SD +PV LL  L +T V
Sbjct: 378 ISDRMPVFLLXTLNYTDV 395


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 177 TNSTGDCSSGT 145
           TN +GD SSGT
Sbjct: 725 TNLSGDSSSGT 735


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
          protein.
          Length = 87

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 83 AERALRAQRGPHVAPTRPP 27
          A R  R+ RGP + P  PP
Sbjct: 38 AMRDPRSNRGPVLFPPGPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,007
Number of Sequences: 438
Number of extensions: 1919
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)