Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O10
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   1.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.1  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   8.1  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 335 IYSSILYGTLFFLVLR*SKNISHKLKHLLVK 243
           +YS +  G +F+L+    +++ HK+K L V+
Sbjct: 233 VYSKLCRGLMFYLLYPFGQHVRHKVKRLSVR 263


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 281  KNISHKLKHLLVKFCIESDF 222
            + +SH+LK L V + +ESD+
Sbjct: 1267 EKLSHELKELTVYYMVESDY 1286


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 580 SYILLFISDRSHLNAVLYLTYCSLLMGNVIALVTRIYKFSLYRVSLNAAKEVF 422
           S + L +S + H      L YCS  M  +   +  + +   YR S    +E F
Sbjct: 51  SLLSLIVSYQQHYPEHRKLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPF 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,857
Number of Sequences: 5004
Number of extensions: 41559
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)