Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O10
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549...    31   0.89 
06_01_1034 + 8110347-8110943,8111201-8111512,8111841-8112011,811...    31   0.89 
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392...    28   4.7  
04_03_0615 + 18048787-18048865,18048897-18049753                       28   6.2  
03_05_0395 - 23763531-23764493,23764539-23764708,23764750-237651...    27   8.2  

>07_03_0149 -
           14452654-14452666,14452943-14454699,14454886-14454990,
           14455808-14455978,14456309-14456641,14456900-14457492,
           14458864-14458906
          Length = 1004

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 283 LYLSTKKNRVPYKIEEYIKRKRSRGDTASY 372
           L LSTK+  + +KIE Y K KRS   TA Y
Sbjct: 740 LKLSTKQKEIVHKIEAYEKFKRSAVGTALY 769


>06_01_1034 +
           8110347-8110943,8111201-8111512,8111841-8112011,
           8112780-8114576
          Length = 958

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 283 LYLSTKKNRVPYKIEEYIKRKRSRGDTASY 372
           L LSTK+  + +KIE Y K KRS   TA Y
Sbjct: 685 LKLSTKQKEIVHKIEAYEKFKRSAVGTALY 714


>11_06_0657 +
           25938382-25938443,25938511-25938718,25939222-25939268,
           25939473-25939805,25940529-25940613,25940689-25940884,
           25941012-25941182,25941261-25941318,25941429-25941657,
           25942296-25943183
          Length = 758

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 284 SKNISHKL-KHLLVKFCIESDFIKFFMSNPNYFRKL 180
           SK   HKL +H  +K   E DF+ FF  NP   RK+
Sbjct: 213 SKQFRHKLLQHKGIK--TEGDFLCFFHKNPKELRKI 246


>04_03_0615 + 18048787-18048865,18048897-18049753
          Length = 311

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -2

Query: 571 LLFISDRSHLNAVLYLTYCSLLMGNVIALVTRIYKFSLYRVSLNAAKEVFTLKMMILLV 395
           LLF+S R  L   L L++CS +    IA +T  Y   L  + LN+  E+ +  +++L V
Sbjct: 76  LLFLSSRCTLLNDLTLSFCSNISDPGIACLT--YCKKLMSLRLNSIPELTSSGLLLLAV 132


>03_05_0395 -
           23763531-23764493,23764539-23764708,23764750-23765112,
           23765298-23765508,23766214-23766381
          Length = 624

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 209 MSNPNYFRKLKDPKLHGVTSAIYQKQSRQNPSSRFEDYQE 90
           +S  N  R L+ PKL  +   IY+    +    R+ D++E
Sbjct: 302 ISKENMSRHLRKPKLDELRKLIYESMDEEEFERRWADFKE 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,105,073
Number of Sequences: 37544
Number of extensions: 201671
Number of successful extensions: 423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)