Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O10
         (581 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC131708-1|AAI31709.1|  365|Homo sapiens NXF5 protein protein.         30   5.2  
AL672207-5|CAI42478.1|  302|Homo sapiens nuclear RNA export fact...    30   5.2  
AL672207-4|CAI42477.1|  368|Homo sapiens nuclear RNA export fact...    30   5.2  
AL672207-3|CAI42476.1|  305|Homo sapiens nuclear RNA export fact...    30   5.2  
AL672207-2|CAI42475.1|  397|Homo sapiens nuclear RNA export fact...    30   5.2  
AJ277658-1|CAC20432.1|  302|Homo sapiens nuclear RNA export fact...    30   5.2  
AJ277657-1|CAC20431.1|  305|Homo sapiens nuclear RNA export fact...    30   5.2  
AJ277655-1|CAC20429.1|  368|Homo sapiens nuclear RNA export fact...    30   5.2  
AJ277654-1|CAC20428.1|  397|Homo sapiens nuclear RNA export fact...    30   5.2  

>BC131708-1|AAI31709.1|  365|Homo sapiens NXF5 protein protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIESDFIKFFMSNPNYFRKLKDPKL 165
           S  LKHL+++F  +S+  K+F  + N  + LKDP L
Sbjct: 274 SETLKHLVLQFLQQSNLCKYFKDSRN-IKILKDPYL 308


>AL672207-5|CAI42478.1|  302|Homo sapiens nuclear RNA export factor
           5 protein.
          Length = 302

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIESDFIKFFMSNPNYFRKLKDPKL 165
           S  LKHL+++F  +S+  K+F  + N  + LKDP L
Sbjct: 211 SETLKHLVLQFLQQSNLCKYFKDSRN-IKILKDPYL 245


>AL672207-4|CAI42477.1|  368|Homo sapiens nuclear RNA export factor
           5 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIESDFIKFFMSNPNYFRKLKDPKL 165
           S  LKHL+++F  +S+  K+F  + N  + LKDP L
Sbjct: 274 SETLKHLVLQFLQQSNLCKYFKDSRN-IKILKDPYL 308


>AL672207-3|CAI42476.1|  305|Homo sapiens nuclear RNA export factor
           5 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIESDFIKFFMSNPNYFRKLKDPKL 165
           S  LKHL+++F  +S+  K+F  + N  + LKDP L
Sbjct: 211 SETLKHLVLQFLQQSNLCKYFKDSRN-IKILKDPYL 245


>AL672207-2|CAI42475.1|  397|Homo sapiens nuclear RNA export factor
           5 protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIESDFIKFFMSNPNYFRKLKDPKL 165
           S  LKHL+++F  +S+  K+F  + N  + LKDP L
Sbjct: 274 SETLKHLVLQFLQQSNLCKYFKDSRN-IKILKDPYL 308


>AJ277658-1|CAC20432.1|  302|Homo sapiens nuclear RNA export factor
           5 protein.
          Length = 302

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIESDFIKFFMSNPNYFRKLKDPKL 165
           S  LKHL+++F  +S+  K+F  + N  + LKDP L
Sbjct: 211 SETLKHLVLQFLQQSNLCKYFKDSRN-IKILKDPYL 245


>AJ277657-1|CAC20431.1|  305|Homo sapiens nuclear RNA export factor
           5 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIESDFIKFFMSNPNYFRKLKDPKL 165
           S  LKHL+++F  +S+  K+F  + N  + LKDP L
Sbjct: 211 SETLKHLVLQFLQQSNLCKYFKDSRN-IKILKDPYL 245


>AJ277655-1|CAC20429.1|  368|Homo sapiens nuclear RNA export factor
           5 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIESDFIKFFMSNPNYFRKLKDPKL 165
           S  LKHL+++F  +S+  K+F  + N  + LKDP L
Sbjct: 274 SETLKHLVLQFLQQSNLCKYFKDSRN-IKILKDPYL 308


>AJ277654-1|CAC20428.1|  397|Homo sapiens nuclear RNA export factor
           5 protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIESDFIKFFMSNPNYFRKLKDPKL 165
           S  LKHL+++F  +S+  K+F  + N  + LKDP L
Sbjct: 274 SETLKHLVLQFLQQSNLCKYFKDSRN-IKILKDPYL 308


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,589,459
Number of Sequences: 237096
Number of extensions: 1132168
Number of successful extensions: 2102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2102
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)