Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O10
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine re...    31   0.79 
U70850-2|AAB09123.1|  229|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    28   5.6  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    28   5.6  
Z70270-3|CAA94227.1|  153|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein63 protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 8   VCNEIFFLYKVPIQKTRFLKCLSVRLFVPGNLRNGWTDFDGTVF 139
           +C +  FL +  IQ T F+  L    F+P    N W  F GT F
Sbjct: 212 LCRDRRFLKQAVIQDTVFMLELLTYFFIPKYFENRWIVFFGTSF 255


>U70850-2|AAB09123.1|  229|Caenorhabditis elegans Hypothetical
           protein F28F9.2 protein.
          Length = 229

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 59  FLKCLSVRLFVPGNLRN 109
           F+KCLS +LF PGN  N
Sbjct: 53  FIKCLSPKLFSPGNTTN 69


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -2

Query: 580  SYILLFISDRSHLNAVLYLTYCSLLMGNVIALVTRIYKFSLYRVSLNAAKEVFTLKMMIL 401
            S+   F++D+  L+  L+L +C +L   +  L++     +   VSL+   +VF  K  + 
Sbjct: 2322 SFTTFFVTDQCSLSPHLWLFWCIILPIGLFLLLSFYAAATSVLVSLHKKYDVFVAKYNVK 2381

Query: 400  LVKFYQSFI 374
               F Q FI
Sbjct: 2382 RAVF-QHFI 2389


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -2

Query: 580  SYILLFISDRSHLNAVLYLTYCSLLMGNVIALVTRIYKFSLYRVSLNAAKEVFTLKMMIL 401
            S+   F++D+  L+  L+L +C +L   +  L++     +   VSL+   +VF  K  + 
Sbjct: 2322 SFTTFFVTDQCSLSPHLWLFWCIILPIGLFLLLSFYAAATSVLVSLHKKYDVFVAKYNVK 2381

Query: 400  LVKFYQSFI 374
               F Q FI
Sbjct: 2382 RAVF-QHFI 2389


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -2

Query: 580  SYILLFISDRSHLNAVLYLTYCSLLMGNVIALVTRIYKFSLYRVSLNAAKEVFTLKMMIL 401
            S+   F++D+  L+  L+L +C +L   +  L++     +   VSL+   +VF  K  + 
Sbjct: 2341 SFTTFFVTDQCSLSPHLWLFWCIILPIGLFLLLSFYAAATSVLVSLHKKYDVFVAKYNVK 2400

Query: 400  LVKFYQSFI 374
               F Q FI
Sbjct: 2401 RAVF-QHFI 2408


>Z70270-3|CAA94227.1|  153|Caenorhabditis elegans Hypothetical
           protein C53D6.5 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 233 ESDFIKFFMSNPNYF---RKLKDPKLHGVTSAIYQKQSRQNPSSRFEDYQEQTD 81
           E +  KFF          +KLKDPKL   TS   +KQ  Q   +R + Y E +D
Sbjct: 77  EKELNKFFRQRTEKLEIEQKLKDPKLDKATSDELKKQ-WQERINRIKKYIEASD 129


>Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical
           protein F35C11.4 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 272 SHKLKHLLVKFCIES--DFIKFFMSNPNYFRKLKDPKLHGVTSAIYQKQSRQNPSSRFED 99
           S  L+ L++K       DF+K +  +PNY RKL    L G  S +    S     S F+ 
Sbjct: 188 SKLLQSLVIKLDYHESIDFVKLY--HPNYLRKLPSYVLMGALSILISFLSCSAIKSLFKS 245

Query: 98  Y 96
           Y
Sbjct: 246 Y 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,806,023
Number of Sequences: 27780
Number of extensions: 220007
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)