Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O08
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   126   7e-30
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   126   7e-30
Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    28   2.6  
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    28   2.6  
Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U23180-2|AAC46726.3|  249|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  126 bits (304), Expect = 7e-30
 Identities = 58/109 (53%), Positives = 76/109 (69%)
 Frame = +1

Query: 109 MMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAA 288
           M R+ ++KDV+Q +  K++A  LKK GKVKVP+  DLVK    KELAP DPDWFY R A+
Sbjct: 1   MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAAS 60

Query: 289 ILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 435
           + RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE
Sbjct: 61  LARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLE 108


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  126 bits (304), Expect = 7e-30
 Identities = 58/109 (53%), Positives = 76/109 (69%)
 Frame = +1

Query: 109 MMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAA 288
           M R+ ++KDV+Q +  K++A  LKK GKVKVP+  DLVK    KELAP DPDWFY R A+
Sbjct: 1   MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAAS 60

Query: 289 ILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 435
           + RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE
Sbjct: 61  LARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLE 108


>Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical
           protein T05F1.5 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 286 QHSVHKTNQGHREPVP*N--ELSLPSPYDLEPSLCRSFSSER 167
           QH+    NQGHR P P +  +LS P P  +  SL     S R
Sbjct: 82  QHNRVGNNQGHRSPSPTSSPQLSSPPPSTMVDSLSTHSESSR 123


>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 156 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 245
           +NCS +  E+DR S G  SYG  +   F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 156 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 245
           +NCS +  E+DR S G  SYG  +   F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189


>Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical
           protein T23D5.6 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 195 HFADLFQVSGYSFD--DFVLFNILHCNGTHHVYF 100
           H   LF + G +F   +FVL+ +LH +   +V+F
Sbjct: 43  HLILLFSILGIAFASLEFVLYPVLHSHNAGYVFF 76


>U23180-2|AAC46726.3|  249|Caenorhabditis elegans Hypothetical
           protein C28F5.2 protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -1

Query: 437 ASRAWRALRAILPDDLQ 387
           ASRAWR L AIL D+L+
Sbjct: 185 ASRAWRTLIAILIDELR 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,627,881
Number of Sequences: 27780
Number of extensions: 187619
Number of successful extensions: 449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)