Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O07
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   171   2e-43
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    28   4.1  
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  171 bits (417), Expect = 2e-43
 Identities = 77/156 (49%), Positives = 112/156 (71%)
 Frame = +1

Query: 100 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 279
           +KK+P VPE+V               Q  +   + + +K+ + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 280 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNK 459
            +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNK
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 460 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRRFRQTE 567
           AT+ +LRI EPY+AWGYPN K++ +L+YKR + + +
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVD 159


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
          protein R17.3 protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 33 HDGCDYRKECC-GREKTCEG 89
          H GC  R+ CC GR  TC+G
Sbjct: 18 HAGCYQRRLCCAGRNNTCKG 37


>AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical
           protein K03H6.1 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 466 VNMLRIAEPYIAWGYPNLKSVRELVYKRRFRQTEREA 576
           +NML I +  I W  P L+S+R  + +   RQ +R A
Sbjct: 244 LNMLMIRQLKINWTSPRLESMRGAMTRSHVRQRQRVA 280


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/108 (17%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +1

Query: 181 ITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL-AFVI 357
           ++LK    ++KK +E      Q+VKE    E + ++   ++ N+ ++Y+   + + A  +
Sbjct: 1   MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60

Query: 358 RIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 501
             +G  ++  ++  V+ +  L+ ++  V             + +P +A
Sbjct: 61  LTKGTMELMAEIH-VMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVA 107


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +2

Query: 197 VPLPLRRGK-----KSLREPNNMSKNTASRSVMKSD 289
           +PL +RR       KS+ +P N+  NTA  ++M SD
Sbjct: 25  IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 179 RSHSRGVPLPLRRGKKSLREPNNMSKN 259
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 233 RGNTKGLTAPLRHNFKSLRKRNGVGKS 259


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 179 RSHSRGVPLPLRRGKKSLREPNNMSKN 259
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 255 RGNTKGLTAPLRHNFKSLRKRNGVGKS 281


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 179 RSHSRGVPLPLRRGKKSLREPNNMSKN 259
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 257 RGNTKGLTAPLRHNFKSLRKRNGVGKS 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,462,766
Number of Sequences: 27780
Number of extensions: 270266
Number of successful extensions: 888
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)