Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O06
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 144 7e-35
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 143 9e-35
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 143 1e-34
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 140 9e-34
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 139 2e-33
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 137 6e-33
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 125 3e-29
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 73 3e-13
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 144 bits (348), Expect = 7e-35
Identities = 67/76 (88%), Positives = 70/76 (92%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFDDAIAELDTL E+SYKDSTLIMQLLR
Sbjct: 172 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLR 231
Query: 194 DNLTLWTSDTQGDGDE 241
DNLTLWTSD DG +
Sbjct: 232 DNLTLWTSDNAEDGGD 247
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 143 bits (347), Expect = 9e-35
Identities = 69/80 (86%), Positives = 73/80 (91%), Gaps = 1/80 (1%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPDKAC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLR
Sbjct: 167 THPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 226
Query: 194 DNLTLWTSD-TQGDGDEPAE 250
DNLTLWTSD T+ GDE E
Sbjct: 227 DNLTLWTSDLTEDGGDEVKE 246
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 143 bits (346), Expect = 1e-34
Identities = 66/76 (86%), Positives = 71/76 (93%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLR
Sbjct: 177 THPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLR 236
Query: 194 DNLTLWTSDTQGDGDE 241
DNLTLWTSD Q DG +
Sbjct: 237 DNLTLWTSDMQDDGGD 252
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 140 bits (339), Expect = 9e-34
Identities = 64/76 (84%), Positives = 70/76 (92%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L E+SYKDSTLIMQLLR
Sbjct: 150 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLR 209
Query: 194 DNLTLWTSDTQGDGDE 241
DNLTLWTSD DG +
Sbjct: 210 DNLTLWTSDANDDGGD 225
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 139 bits (336), Expect = 2e-33
Identities = 65/76 (85%), Positives = 70/76 (92%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLR
Sbjct: 173 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 232
Query: 194 DNLTLWTSDTQGDGDE 241
DNLTLWTSD D E
Sbjct: 233 DNLTLWTSDISEDTAE 248
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 137 bits (332), Expect = 6e-33
Identities = 63/69 (91%), Positives = 68/69 (98%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLR
Sbjct: 391 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLR 450
Query: 194 DNLTLWTSD 220
DNLTLWTSD
Sbjct: 451 DNLTLWTSD 459
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 125 bits (301), Expect = 3e-29
Identities = 59/82 (71%), Positives = 67/82 (81%)
Frame = +2
Query: 14 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 193
T PIRLGLALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++YKDSTLIMQLLR
Sbjct: 157 TDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLR 216
Query: 194 DNLTLWTSDTQGDGDEPAEGGD 259
DNL LW SD D D+ E D
Sbjct: 217 DNLALWNSDMADDADDIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/55 (56%), Positives = 44/55 (80%)
Frame = +2
Query: 65 EILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 229
EI+NSP++A Q+AKQA D+A AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,754,667
Number of Sequences: 37544
Number of extensions: 205322
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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