Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O05
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 153 2e-38
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 151 1e-37
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.11
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 1.8
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 27 1.8
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 27 3.1
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 26 5.4
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.2
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 25 7.2
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.2
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 7.2
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 25 7.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 9.5
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 9.5
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 9.5
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 9.5
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 153 bits (371), Expect = 2e-38
Identities = 68/136 (50%), Positives = 95/136 (69%), Gaps = 2/136 (1%)
Frame = +1
Query: 190 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 369
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 370 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FCAKDLKDPAKRKKLRFNSRVRFEE 543
+I +RS++KPF+K VNYNHLMPTRY+++ K A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 544 RYKSGKNKWFFQKLRF 591
+Y+SGK+ WFF LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 151 bits (365), Expect = 1e-37
Identities = 66/136 (48%), Positives = 95/136 (69%), Gaps = 2/136 (1%)
Frame = +1
Query: 190 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 369
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 370 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FCAKDLKDPAKRKKLRFNSRVRFEE 543
+I KRS++KPF+K +NYNHLMPTRY+++ K +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 544 RYKSGKNKWFFQKLRF 591
+Y++GK+ WFF LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.11
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 181 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 282
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 196 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 279
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 448 VDFSFEKFCAKDLKDPAKRKKLRFNSRVRFEER 546
VD++ E+FC DP+ + N+ ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 243 VPAAEDQHHFSRFHNLTHLGWI 178
+P +HFSRF + T GWI
Sbjct: 7 IPFTRALYHFSRFRSFTTSGWI 28
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 192 G*DYETWKSGAGPQRPVR 245
G + E WKSGAG Q P++
Sbjct: 435 GMEVEVWKSGAGAQLPMK 452
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -1
Query: 317 TKACPYGLSDV-PSS*FFTTMALRPAY--RPLRTSTTFPGFIIL 195
T AC YGL +V S+ FF +++R Y R ++ FP I++
Sbjct: 73 TMACNYGLKNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVM 116
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 372 FIFSHPFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFT 250
FI F ++ D ESM F+R A +++ Y G T
Sbjct: 1092 FICQQVFQSVILAIHDPYFESMQSDFIRLACIILSYSQGIT 1132
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 361 GKNKIHKRSKIKPFVKGVNYNHLMPTR-YSVDFSFEKFCAKDLKDP 495
G + I R K P K VNYNH + S +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 478 KDLKDPAKRKKLRFNSRVRFEERYKSGKN 564
K L DP+ R+K F S+ + +Y+ KN
Sbjct: 160 KSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 194 VRL*NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLSS 319
+RL L ++CWS ++ S R +LT ++++L++
Sbjct: 94 LRLQRLRQYCWSGGKRMESCLDTSLSTYERDYLTRYSELLAA 135
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 361 GKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFCAK 480
G+ KIH + +++ N+ H+ TR+ F KF +
Sbjct: 85 GEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCKFLGR 124
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 296 LSDVPSS*FFTTMALRPAYRPLRTSTTFPG 207
L ++P + FF T+ AY P S T G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 454 FSFEKFCAKDLKDPAKRKKLRFNSRVRFEERYKSGKNKWFFQKLR 588
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +1
Query: 367 NKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFCAKDLKDPAKRKKLRFNSRVRFEER 546
N I SK ++ GV+ + + Y + +C AK +L NSR F+ R
Sbjct: 165 NVIVVLSKNPLYLVGVSPSTTLSAAYLLSELNLLYCQILTGVTAKAMQLTLNSRPNFDLR 224
Query: 547 YKSGKNKWFFQKL 585
G N+ F ++L
Sbjct: 225 RLIGSNEQFLKEL 237
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 391 IKPFVKGVNYNHLMPTRYSVDFSFEKFCAKDLKDPAKRKKL 513
+ PF K Y H + T S S KF + P K+ KL
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPE-PSPTKKTKL 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,653
Number of Sequences: 5004
Number of extensions: 57676
Number of successful extensions: 142
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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