Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O05
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 190 1e-48
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 190 1e-48
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 30 1.2
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 30 1.2
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 30 1.2
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 30 1.2
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 2.2
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 2.2
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 2.2
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 2.2
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 28 6.6
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 28 6.6
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 28 6.6
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 190 bits (462), Expect = 1e-48
Identities = 89/136 (65%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Frame = +1
Query: 190 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 369
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 370 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FCAKDLKDPAKRKKLRFNSRVRFEE 543
KI KR+K+KPF+K V+Y HL+PTRYSVD +F+K + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 544 RYKSGKNKWFFQKLRF 591
RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 190 bits (462), Expect = 1e-48
Identities = 89/136 (65%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Frame = +1
Query: 190 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 369
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 370 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FCAKDLKDPAKRKKLRFNSRVRFEE 543
KI KR+K+KPF+K V+Y HL+PTRYSVD +F+K + LK P+K++K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 544 RYKSGKNKWFFQKLRF 591
RYK+GKNKWFF KLRF
Sbjct: 121 RYKTGKNKWFFTKLRF 136
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = -3
Query: 336 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 178
V+V E +WF+ + G +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = -3
Query: 336 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 178
V+V E +WF+ + G +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = -3
Query: 336 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 178
V+V E +WF+ + G +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = -3
Query: 336 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWI 178
V+V E +WF+ + G +PA D H + + H+ W+
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 196 KIMKPGKVVLVLSGRYAGRKAIVVK 270
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 319 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 468
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 319 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 468
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 319 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 468
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 289 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 429
SD P A I R+ + +R+G + K PFVK +++NH+
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 389
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 289 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 429
SD P A I R+ + +R+G + K PFVK +++NH+
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 389
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 289 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHL 429
SD P A I R+ + +R+G + K PFVK +++NH+
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHI 382
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 319 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 468
AG++R V + N+ KR KI + YNHL+PT +D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVPT---IDYSAMK 430
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,861
Number of Sequences: 27780
Number of extensions: 317117
Number of successful extensions: 829
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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