Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O05
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   4.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  

>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 463 EKFCAKDLKDPAKRKKLRFNSRVRFEERY 549
           EK C++D     K+K  R++     EE++
Sbjct: 1   EKSCSRDRSREYKKKDRRYDQLHNVEEKH 29


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 152 NLLPKINSLIHPRW 193
           N+ P+ + L+HP W
Sbjct: 33  NVPPEYSDLVHPHW 46


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 206  NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLSSPAS 328
            NL++   S  A +  +K L    T + +LT+H  + SSP+S
Sbjct: 1447 NLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSS 1487


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 206  NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLSSPAS 328
            NL++   S  A +  +K L    T + +LT+H  + SSP+S
Sbjct: 1443 NLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSS 1483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,576
Number of Sequences: 438
Number of extensions: 4214
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)