Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O03
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,732... 98 4e-21
08_02_0625 + 19438768-19438889,19438897-19439065,19439131-194391... 31 0.53
04_04_1573 - 34533973-34535595 31 0.93
03_02_0368 + 7840665-7841975 29 2.8
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 29 3.7
05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846 28 6.5
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 28 6.5
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 28 6.5
10_08_0295 - 16581014-16583071 27 8.7
06_03_1294 - 29080347-29081447 27 8.7
>01_01_0926 + 7324145-7324561,7324773-7324778,7325255-7325311,
7325572-7325661,7325938-7325982,7326088-7326142,
7326245-7326288,7326401-7326790,7327276-7327541,
7328292-7328430,7328514-7328564,7329158-7329642,
7329724-7330327,7330717-7331025
Length = 985
Score = 98.3 bits (234), Expect = 4e-21
Identities = 82/235 (34%), Positives = 112/235 (47%), Gaps = 37/235 (15%)
Frame = +1
Query: 10 AIVLQVDENRSILLDCGEGTFGQLVRFYGPKKVNAFLRTLKAIYISHLHADHHIGLIGVL 189
+I + + ILLDCGEGT GQL R +G + +++LK I+ISH+HADHH G+
Sbjct: 656 SIYINLFTQGGILLDCGEGTLGQLKRRFGVSGADDAVKSLKCIWISHIHADHHTGV---- 711
Query: 190 QARRLALEELSPPGNP-EPCYLLAPGQIVTWLNMY------DHQF----ERIKADFTLIP 336
AR LAL G P +P ++ P + +LN Y D QF + +K
Sbjct: 712 -ARVLALRSKLLKGVPHKPLLVIGPRPLERFLNAYSTLEDLDMQFLDCRQTLKPSIEAFL 770
Query: 337 NQNLLYNGGS----------SKTDVTSPVTAKAEMTSA------VLAAIGLQQIDTCLVS 468
+ N + S SK + S A T+A VL GL+ + + V
Sbjct: 771 SDNATESATSQLGSTIFAPGSKMENYSRKPASPRDTTALTNLKDVLHESGLEVLYSVPVL 830
Query: 469 HCPNAFGVALELDK----------GQKITYSGDTLPCEELVKIGVNSTLLIHEAT 603
HCP AFGV L + G K+ YSGDT PC LV ++T+LIHEAT
Sbjct: 831 HCPQAFGVVLRAKEKVSSAGKAIPGWKVVYSGDTRPCPALVDASRDATVLIHEAT 885
>08_02_0625 +
19438768-19438889,19438897-19439065,19439131-19439174,
19439431-19440061
Length = 321
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 514 GLYPAPVRLRKRWDSATPGTCRSAAARW 431
G++P+P LR W++ + G AAA W
Sbjct: 178 GVFPSPPSLRSGWEACSGGASEGAAAGW 205
>04_04_1573 - 34533973-34535595
Length = 540
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 461 RHVSICCSPMAASTADVISAFAVTG---DVTSVFDD 363
RH S C+P AAS +SA A G D ++FDD
Sbjct: 80 RHSSPACAPTAASYTSAMSALAKAGRPADAAALFDD 115
>03_02_0368 + 7840665-7841975
Length = 436
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +3
Query: 138 IYITFTRRPSHRSDRGPTSSEAGTRGVVTAREPGTLLSPRAGSDRDLAQHVRPPVREDKG 317
++++ TRR + RS PTS+ G G E L + A R E+
Sbjct: 94 LFVSLTRRSTPRSSPSPTSASGGDGG---ESEQWRLAAADLSRRLAAATRTRDEALEETT 150
Query: 318 RL-HSHTEPESAIQR 359
RL HS TE E + R
Sbjct: 151 RLKHSLTELEMKLAR 165
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 340 QNLLYNGGSSKTDVTSPVTAKAEMTSAVLAAIGLQQIDTCLVSHCPNAFGVALELDKGQ 516
+ L Y+G +V T+ E+ A+ +G+ D + H P F V + +GQ
Sbjct: 380 ERLHYHGALISAEVEGQETSPREVARALTQQVGIPISDLRVTRHHPEDFFVFFDFPEGQ 438
>05_04_0248 - 19363567-19363814,19363900-19364092,19364202-19364846
Length = 361
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 186 PTSSEAGTRGVVTAREPGTLLSPRAGSDR 272
P + AGT + T P TLLSP GS +
Sbjct: 53 PGEAAAGTAAMETLLSPSTLLSPLRGSKK 81
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +1
Query: 79 LVRFYGPKKVNA---FLRTLKAIYISHLHAD 162
+V Y KKV FLR+LK +++ HLH D
Sbjct: 822 IVSLYNVKKVPEGIEFLRSLKKLWLLHLHKD 852
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -2
Query: 572 TPILTSSSQGNVSPE*VIFWPLSSSSATPKALGQCDTRH-VSICCSPMAASTADVISAFA 396
TP+L + + N P+ + L SS+++PK H +++ P+ AS V A
Sbjct: 794 TPLLVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRA 853
Query: 395 VTG 387
+ G
Sbjct: 854 LGG 856
>10_08_0295 - 16581014-16583071
Length = 685
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 340 QNLLYNGGSSKTDVTSPVTAKAEMTSAVLAAIGLQQIDTCLVSHCPNAFGVALELDKGQ 516
+ L ++G +V T+ E+ A+ +G+ D + H P F V + +GQ
Sbjct: 30 ERLRFHGALISAEVEGQETSPREVARALTQQVGIPISDLRVTRHHPEDFFVFFDFPEGQ 88
>06_03_1294 - 29080347-29081447
Length = 366
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 491 SHWSWIKARRSPTLETRCP 547
SHW W +RR P + CP
Sbjct: 119 SHWWWPASRRPPIIPPSCP 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,977
Number of Sequences: 37544
Number of extensions: 370998
Number of successful extensions: 1220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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