Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_O03
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-5|AAT27250.1| 760|Caenorhabditis elegans Homolog of el... 82 3e-16
AF038611-4|AAB92042.3| 833|Caenorhabditis elegans Homolog of el... 82 3e-16
Z70780-9|CAA94826.1| 127|Caenorhabditis elegans Hypothetical pr... 29 2.6
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 29 2.6
Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical... 28 5.9
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical... 28 5.9
AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopam... 28 5.9
AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopam... 28 5.9
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 27 7.8
>AF038611-5|AAT27250.1| 760|Caenorhabditis elegans Homolog of elac2
(cancer susceptibilitylocus) protein 1, isoform b
protein.
Length = 760
Score = 81.8 bits (193), Expect = 3e-16
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Frame = +1
Query: 16 VLQVDENRSILLDCGEGTFGQLVRFYGPKKVNAFLRTLKAIYISHLHADHHIGLIGVLQA 195
+++ EN +IL+D GEGT+GQ+ +G L L + I+H H DH GL ++
Sbjct: 441 LVEASENSAILIDVGEGTYGQMRAVFGEDGCKQLLVNLNCVLITHAHQDHMNGLYTIIAR 500
Query: 196 RRLALEELSPPGNPEPCYLLAPGQIVTWLNMYDHQFERIK-----ADFTLIPNQNLLYNG 360
R+ A E L P P L+ ++ + Y FE I+ D + P G
Sbjct: 501 RKEAFESLGAP--YRPLVLVCNRNVLKPMKTYSICFENIEHLLEIVDISRYPLTPPGSPG 558
Query: 361 G--SSKTDVTSPVTAKA-----EMTSAV-LAAIGLQQIDTCLVSHCPNAFGVALELDKGQ 516
G + + SP + +M+S+ A L ++ V H A G + + G+
Sbjct: 559 GPPGKRPRLPSPHLPPSRDVLQDMSSSFDKKAWKLDELKAVQVHHTRMANGFVMRV-AGK 617
Query: 517 KITYSGDTLPCEELVKIGVNSTLLIHEAT 603
+I +SGDT PC+ LV+ G ++ +L+HE+T
Sbjct: 618 RIVFSGDTKPCDLLVEEGKDADVLVHEST 646
>AF038611-4|AAB92042.3| 833|Caenorhabditis elegans Homolog of elac2
(cancer susceptibilitylocus) protein 1, isoform a
protein.
Length = 833
Score = 81.8 bits (193), Expect = 3e-16
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Frame = +1
Query: 16 VLQVDENRSILLDCGEGTFGQLVRFYGPKKVNAFLRTLKAIYISHLHADHHIGLIGVLQA 195
+++ EN +IL+D GEGT+GQ+ +G L L + I+H H DH GL ++
Sbjct: 514 LVEASENSAILIDVGEGTYGQMRAVFGEDGCKQLLVNLNCVLITHAHQDHMNGLYTIIAR 573
Query: 196 RRLALEELSPPGNPEPCYLLAPGQIVTWLNMYDHQFERIK-----ADFTLIPNQNLLYNG 360
R+ A E L P P L+ ++ + Y FE I+ D + P G
Sbjct: 574 RKEAFESLGAP--YRPLVLVCNRNVLKPMKTYSICFENIEHLLEIVDISRYPLTPPGSPG 631
Query: 361 G--SSKTDVTSPVTAKA-----EMTSAV-LAAIGLQQIDTCLVSHCPNAFGVALELDKGQ 516
G + + SP + +M+S+ A L ++ V H A G + + G+
Sbjct: 632 GPPGKRPRLPSPHLPPSRDVLQDMSSSFDKKAWKLDELKAVQVHHTRMANGFVMRV-AGK 690
Query: 517 KITYSGDTLPCEELVKIGVNSTLLIHEAT 603
+I +SGDT PC+ LV+ G ++ +L+HE+T
Sbjct: 691 RIVFSGDTKPCDLLVEEGKDADVLVHEST 719
>Z70780-9|CAA94826.1| 127|Caenorhabditis elegans Hypothetical
protein F46B6.10 protein.
Length = 127
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 171 RSDRGPTSSEAGTRGVVTAREP 236
R DRG T ++ G RGV +++EP
Sbjct: 56 RDDRGSTKTKGGRRGVKSSKEP 77
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +3
Query: 162 PSHRSDRGPTSSEAGTRGVVTAREPGTLLSPRAGSDRDLAQHVRPPVREDKGRLHSHTEP 341
PS + PT + + RE GT ++ + D+AQ P+R+ + + H P
Sbjct: 208 PSEETSSVPTENVEESEEDADEREEGTTVNVNSSEVPDVAQPAVQPIRDPQPLVFQHHAP 267
Query: 342 ESA 350
A
Sbjct: 268 RLA 270
>Z81101-6|CAE53732.1| 840|Caenorhabditis elegans Hypothetical
protein K09G1.4b protein.
Length = 840
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 114 VLENFKSDIYITFTRRPSHRSDRGPTSSEAGT 209
+ +F S+ TF+RR S+ D PTSS+ +
Sbjct: 427 ITNDFVSENCTTFSRRSSYADDSQPTSSQTSS 458
>Z81101-5|CAB03199.3| 705|Caenorhabditis elegans Hypothetical
protein K09G1.4a protein.
Length = 705
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 114 VLENFKSDIYITFTRRPSHRSDRGPTSSEAGT 209
+ +F S+ TF+RR S+ D PTSS+ +
Sbjct: 292 ITNDFVSENCTTFSRRSSYADDSQPTSSQTSS 323
>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
protein Y105E8A.26b protein.
Length = 1133
Score = 27.9 bits (59), Expect = 5.9
Identities = 26/81 (32%), Positives = 39/81 (48%)
Frame = +1
Query: 175 LIGVLQARRLALEELSPPGNPEPCYLLAPGQIVTWLNMYDHQFERIKADFTLIPNQNLLY 354
LIG LQ RRL + E PP P LL P L +D + +K+++ + +L
Sbjct: 694 LIGHLQQRRLWMPEF-PPNLPLEDVLLFP------LPKWDGDVDSLKSEY-VDYQDSLPR 745
Query: 355 NGGSSKTDVTSPVTAKAEMTS 417
GG K D +SP+ ++ S
Sbjct: 746 KGGEKKWD-SSPLQTPGDLPS 765
>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
protein Y105E8A.26a protein.
Length = 1172
Score = 27.9 bits (59), Expect = 5.9
Identities = 26/81 (32%), Positives = 39/81 (48%)
Frame = +1
Query: 175 LIGVLQARRLALEELSPPGNPEPCYLLAPGQIVTWLNMYDHQFERIKADFTLIPNQNLLY 354
LIG LQ RRL + E PP P LL P L +D + +K+++ + +L
Sbjct: 694 LIGHLQQRRLWMPEF-PPNLPLEDVLLFP------LPKWDGDVDSLKSEY-VDYQDSLPR 745
Query: 355 NGGSSKTDVTSPVTAKAEMTS 417
GG K D +SP+ ++ S
Sbjct: 746 KGGEKKWD-SSPLQTPGDLPS 765
>AB125702-1|BAD01496.1| 705|Caenorhabditis elegans D2-like dopamine
receptor shortvariant protein.
Length = 705
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 114 VLENFKSDIYITFTRRPSHRSDRGPTSSEAGT 209
+ +F S+ TF+RR S+ D PTSS+ +
Sbjct: 292 ITNDFVSENCTTFSRRSSYADDSQPTSSQTSS 323
>AB125701-1|BAD01495.1| 840|Caenorhabditis elegans D2-like dopamine
receptor longvariant protein.
Length = 840
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 114 VLENFKSDIYITFTRRPSHRSDRGPTSSEAGT 209
+ +F S+ TF+RR S+ D PTSS+ +
Sbjct: 427 ITNDFVSENCTTFSRRSSYADDSQPTSSQTSS 458
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 587 SSVEFTPILTSSSQGNVSPE*VIFWPLSSSSATPKALGQCDTR 459
++V T I TS+ SP + P+++SSATPK + TR
Sbjct: 586 TTVSTTTITTSTPPSTTSPTTTVT-PVATSSATPKPSKRTTTR 627
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,943,515
Number of Sequences: 27780
Number of extensions: 287189
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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