Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O03
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   9.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 110 LTFLGP*KRTSCPNVPSP 57
           +TFLG   RT  P VP P
Sbjct: 256 MTFLGLEARTDLPKVPYP 273


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 410 ISAFAVTGDVTSVFDDPPLYSRFW 339
           +    VT +V S+F++P +  + W
Sbjct: 6   VPVLLVTANVGSIFEEPSVMLKIW 29


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 155 TPTITSV*SGSYKLGGWHSRSCHRPGTRNLAIS 253
           TP+  S  S  Y  G  HS+ C  P + +L +S
Sbjct: 361 TPSKCSQTSVHYSNGQTHSQLCPTPRSTHLKVS 393


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +2

Query: 422 CWPPSGCSRSTRAWCRT 472
           CW P  C     ++C+T
Sbjct: 284 CWVPFFCVNIVTSYCKT 300


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 493 RLRKRWDSATPGTCRSAAARW 431
           RLRK  DS T G      A W
Sbjct: 493 RLRKELDSKTGGVNLKGHAHW 513


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 199 RLALEELSPPGNPEPCYLLAP 261
           RL  E  + PGN  P Y+  P
Sbjct: 115 RLRREPEAEPGNNRPVYIPQP 135



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 199 RLALEELSPPGNPEPCYLLAP 261
           RL  E  + PGN  P Y+  P
Sbjct: 141 RLRREPEAEPGNNRPVYIPQP 161


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 370 KTDVTSPVTAKAEMTSAVLAAIGLQQIDTCLVSHCPNAFGVALELDKGQK 519
           K  ++S  T  + MTS     +      TC V++ P+   +   L K +K
Sbjct: 320 KPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERK 369


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 227 GGDNSSSASLRACRTPI 177
           GG  S ++++R C +PI
Sbjct: 579 GGKTSPNSAVRKCMSPI 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,817
Number of Sequences: 438
Number of extensions: 3613
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)