Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_O02
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-4|AAB42323.1|  299|Caenorhabditis elegans Hypothetical pr...    77   6e-15
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    33   0.10 
AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical ...    29   2.2  
U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF016414-6|AAG24022.1|  323|Caenorhabditis elegans Serpentine re...    27   5.1  
Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U88308-4|AAB42323.1|  299|Caenorhabditis elegans Hypothetical
           protein C32E8.5 protein.
          Length = 299

 Score = 77.0 bits (181), Expect = 6e-15
 Identities = 32/49 (65%), Positives = 42/49 (85%)
 Frame = +2

Query: 11  VRPYIIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQREYVLLHE 157
           + PYIIDL S NGTF+N KKIEP+RY+EL E+D++K+GFS REYV++ E
Sbjct: 231 IMPYIIDLGSGNGTFLNEKKIEPQRYIELQEKDMLKFGFSTREYVVMKE 279


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 5   EGVRPYIIDLESANGTFVNNKKIEPRRYVELLERDVVKYG 124
           +GV  Y+++  S NGT++N++++   +   L   D +K+G
Sbjct: 78  DGVEEYLVEDISENGTYINDRRLSKDKREILKSGDTIKFG 117


>AF067608-3|AAC17655.2|  302|Caenorhabditis elegans Hypothetical
           protein B0511.7 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 23  IIDLESANGTFVNNKKIEPRRYVELLERDVVKYGFSQREY 142
           +ID++S++GTF+ N ++ P   V +        G S R+Y
Sbjct: 81  LIDMDSSHGTFLGNVRLRPLEVVFMDPGTQFHLGASTRKY 120


>AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical
           protein M4.1 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +2

Query: 20  YIIDLESANGTFVNNKKIE 76
           ++ D +S+NGTFVNN+K++
Sbjct: 69  WLKDTKSSNGTFVNNEKLQ 87


>U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical
           protein F47B7.2b protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 407 LFESLMHVLL*YLFCSKHKTSSRFIIAINF--DFSLCIWA 294
           +F SL+ V L  ++C   K  S+F     +  DF LC W+
Sbjct: 630 IFLSLIGVALIVIYCKYRKNRSKFWKTFYYKNDFKLCPWS 669


>AF016414-6|AAG24022.1|  323|Caenorhabditis elegans Serpentine
           receptor, class h protein211 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -1

Query: 442 WNKVR*ETFLILYLNL*CMFYCNICFAVNIKQ--VPVLLLQLISISASVYGP 293
           W +VR  +F+ILY+ +   ++    F V   +  VPV+L+QL ++     GP
Sbjct: 131 WKRVRQASFVILYI-VALTYFIPFIFQVPDPEISVPVVLMQLPTLRCFYKGP 181


>Z34799-7|CAA84320.2|  574|Caenorhabditis elegans Hypothetical
           protein F34D10.2 protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 60  IIKRSNRVVTWNYWNGTWSSTAS 128
           I +R  R + W Y+  TW S+ S
Sbjct: 178 IWERQRRTILWRYYESTWFSSPS 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,466,035
Number of Sequences: 27780
Number of extensions: 160323
Number of successful extensions: 397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)