Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N24
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   155   5e-39
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   150   1e-37
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    29   0.54 
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    28   0.71 
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    26   2.9  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   2.9  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   5.0  
SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    25   6.7  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   8.8  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.8  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.8  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.8  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  155 bits (375), Expect = 5e-39
 Identities = 81/154 (52%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
 Frame = +1

Query: 34  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 213
           ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 214 AWRHFYWYLTNEGIEYLRIFPHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 393
            W  FY+ LTNEG+EYLR + HLP E+VPAT KR VR    R    GRP+   R++   +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116

Query: 394 AYRRAPPAGAPHDKKAD-VGPGSADVEFRGGFGR 492
            YRRA       +KK D   PG     FRGGFGR
Sbjct: 117 GYRRA-------EKKDDGAAPGGFAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  150 bits (364), Expect = 1e-37
 Identities = 79/153 (51%), Positives = 101/153 (66%)
 Frame = +1

Query: 34  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 213
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 214 AWRHFYWYLTNEGIEYLRIFPHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 393
            W  FY+ LTNEG+EYLR + HLP E+VPAT KR VR    R    GRP+   R + D +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115

Query: 394 AYRRAPPAGAPHDKKADVGPGSADVEFRGGFGR 492
            YRRA        K     P      FRGGFGR
Sbjct: 116 GYRRA------EKKDEGAAPSGFAPSFRGGFGR 142


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 263 LEFSRTYLLKLYQQP*RGQCVQRQYVVVQLAGLMLQHEQLKIDQLIGAHHQLELLMIRRL 442
           ++F+    L L  +   G        + Q AGL+  HE L+  ++  AH +  LL +R+ 
Sbjct: 730 MKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHEDLEAKEICQAHFKTALLALRKA 789

Query: 443 MS 448
           ++
Sbjct: 790 IT 791


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 274 PHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPH 429
           P + P   PA +  +       +    +P  P +     + Y++APPAGAP+
Sbjct: 86  PPVQPPNDPAIIGSNSGQYNWNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPY 137


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 497 RPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGAS 360
           +PLP PP NS+     P SA               +++S V +G+S
Sbjct: 89  QPLPLPPRNSSLYARFPLSAGAGASSHSEETTPSHEVTSNVSSGSS 134


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 439  PSYHEELQLVVRADKLIYLQLFVLEHQACQLHHDVLSLYALTSSGLLVQ-FQEVSAGKF* 263
            PSY +     +  +K ++L L  L H   +    +LSLY  + +  +V+    V    F 
Sbjct: 992  PSYFDVFFPSLGMEKRVHLDLLNLTHVRFEEDQGILSLYDESGAVTVVKLLTSVKVKLFV 1051

Query: 262  GIQYPHLLNTS 230
             +  P L+N S
Sbjct: 1052 QLSTPPLINVS 1062


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 253 IEYLRIFPHLPPEIVPATLKRSVRTETVRRGAVGR 357
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +1

Query: 337 RRGAVGRPDAPARTAEDRSAYRR-APPAGAPHDKKADVGPGSADVEFRG 480
           RRG V   D     A     Y R AP +G       D G G  D ++RG
Sbjct: 37  RRGKV-LVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTGAGVIDADYRG 84


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 153 VRDLLEIWMFGCMVVFLSYHDSLLE 79
           + +  +IW FGC +  + +H S  E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +1

Query: 283 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 426
           PP   P +   S    T    A     APA  A    AY  AP    P
Sbjct: 58  PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = +1

Query: 283 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA-GAPHDKKADVGPGS 459
           P    P+    S R  T     V  P +PAR     SAY  APPA G  +      G  S
Sbjct: 281 PYASTPSAAVGSSRGSTPASATV--PISPARGFPTTSAYNPAPPAYGMANPAYGSTGIRS 338

Query: 460 ADVEFRG 480
           + +   G
Sbjct: 339 SSIPSSG 345


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 286 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 393
           P I P ++   V   TVR G+   PD P+ +   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -2

Query: 494 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVSVRTD 315
           P+P  P++ + A+P P S  LS               SAV   +S +P A    VS   D
Sbjct: 315 PVPMSPISISPAKPSPQSPKLS--------------QSAVGHPSSSIPAAAMHKVSYSDD 360

Query: 314 LFR 306
           L R
Sbjct: 361 LMR 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,782
Number of Sequences: 5004
Number of extensions: 39490
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)