Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N23
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    26   4.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.6  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   6.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.0  

>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -3

Query: 500 EKSAQMRLDKKN*QNCSWFQEYAKLTEFVLDLDFSLLEMFVQNKKKYRTLHFTGNLSQLL 321
           E++ Q R+D    QN ++  EY  +T   +   +S +   +Q  KKY    +   L Q  
Sbjct: 121 EEAIQNRVDYSTKQNYNF--EYVNVTGLPIPAVWSKMPAVLQTMKKYPKAEWIWLLDQDA 178

Query: 320 FITIT 306
            IT T
Sbjct: 179 IITNT 183


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 88  FFLYLSI*KNWASIFKKMQ*RIY 156
           FFL +SI   W +IF +M  RIY
Sbjct: 744 FFLGISIWTPWRNIFARMPKRIY 766


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 262 FYCQFFFVLNGKMLDYII 209
           +Y  F FV  G+MLDYII
Sbjct: 216 YYMVFEFVDGGQMLDYII 233


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 95   RKNISHKFKQLPVKLCIESDF 33
            R+ +SH+ K+L V   +ESD+
Sbjct: 1266 REKLSHELKELTVYYMVESDY 1286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,752
Number of Sequences: 5004
Number of extensions: 46404
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)