Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N22
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    27   1.3  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   5.2  

>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 511 CQNTSTRSRDYPEQTDRQTNKILKKIYFGI 422
           C  T  R + Y +Q D ++ KIL  + FG+
Sbjct: 262 CSKTWIRQKHYLQQLDDKSGKILSHLKFGL 291


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 21  IDKFRYLSFSSIHIIIMPTFM 83
           +D+FRY+S SS   +I+P+F+
Sbjct: 402 LDRFRYVSKSSEEDLIVPSFV 422


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 502 TSTRSRDYPEQTDRQTNKILKKI 434
           TST+S   PE T   T ++LK++
Sbjct: 286 TSTKSSPVPESTTTNTTEVLKEL 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,567
Number of Sequences: 5004
Number of extensions: 36828
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)