Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N20
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665...    36   0.027
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506...    30   1.0  
09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435...    29   2.4  
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    29   3.1  
06_01_0089 + 715820-716085,716178-717015                               28   4.1  
05_01_0169 - 1170614-1172098                                           28   4.1  
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256...    28   5.5  
02_05_1327 - 35718908-35719270,35719537-35719953,35720183-35720557     27   9.6  

>07_01_1203 -
           11464142-11464324,11464422-11464484,11464685-11466515,
           11467240-11468036
          Length = 957

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 220 WLAPGSGVFTESAECHTDVSIYFLYRLM 303
           W  PG G+F     CHTD+++ FL+  M
Sbjct: 803 WTVPGGGLFPNLRRCHTDIALTFLHGAM 830


>09_04_0163 -
           15249816-15249920,15250032-15250163,15250463-15250629,
           15251259-15251448,15252530-15252661,15253275-15253382,
           15253513-15253608,15253702-15253809,15253917-15254089,
           15255026-15255401,15255887-15256030,15256125-15256799,
           15256917-15256982,15257082-15257249
          Length = 879

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 222 PRRSRVRFPNEHRQADEQQY 163
           PR +++R PN+H QA+E+QY
Sbjct: 695 PRIAQMREPNQHAQAEERQY 714


>09_02_0107 +
           4354470-4354589,4355058-4355156,4355292-4355596,
           4356101-4356278,4356368-4356481,4356543-4356674,
           4356784-4356888
          Length = 350

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 222 PRRSRVRFPNEHRQADEQQY 163
           PR +++R PN+H Q +E+QY
Sbjct: 86  PRIAQIREPNQHAQIEERQY 105


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 222 PRRSRVRFPNEHRQADEQQY 163
           PR +++R PN+H Q +E+QY
Sbjct: 478 PRIAQMREPNQHAQTEERQY 497


>06_01_0089 + 715820-716085,716178-717015
          Length = 367

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 519 PQGQNAKSIPLAPPPPGLRMQWHNC 445
           P   N  + P+APPPP +    H C
Sbjct: 297 PSASNMTTSPMAPPPPMVAADDHQC 321


>05_01_0169 - 1170614-1172098
          Length = 494

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 483 PPPPGLRMQWHNCEQLKTKIRKSILLTQLPFTVGIYLTF 367
           PPPP + +    C +   + +K+  + + PF  G+ L F
Sbjct: 367 PPPPAISLTMGRCTRSADEKKKNSDIREDPFLAGLVLNF 405


>06_03_0497 +
           21424732-21424899,21424992-21425057,21425176-21425634,
           21425945-21426088,21426172-21426306,21426418-21426808,
           21427256-21427428,21427508-21427615,21427715-21427810,
           21427896-21428003,21428644-21428792,21428924-21428925,
           21429071-21429207,21429538-21429842,21430922-21431099,
           21431192-21431305,21431373-21431504,21431610-21431843
          Length = 1032

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 222 PRRSRVRFPNEHRQADEQQY 163
           PR +++R PN+H Q +E+QY
Sbjct: 725 PRIAQMREPNQHVQTEERQY 744


>02_05_1327 - 35718908-35719270,35719537-35719953,35720183-35720557
          Length = 384

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +1

Query: 139 SAKNSATSVLLLVCLAMFVRESNARPPWLAPGS 237
           +AKN     LLL   A  V E  AR  WLAPGS
Sbjct: 341 AAKNPDLLPLLLAAAACTVGEE-ARRRWLAPGS 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,981,697
Number of Sequences: 37544
Number of extensions: 294377
Number of successful extensions: 1042
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)