Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N19
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   2.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    27   2.6  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 147 RPKKRIIIGARVFEAL----YVFTHWPNAVFIFFFRTRC 251
           +P+K +++ A +F AL    ++F +   A F++  R  C
Sbjct: 170 KPEKNMLLSAAIFSALICFKHIFLYVAPAYFVYLLRVYC 208


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 409 YLHQHYLVEQ*FISSKNNNLYYDAVHNFTSAVIPRF 516
           YL  H  +   + +S N N Y++  H+     + RF
Sbjct: 90  YLESHNGISNAYTASNNTNYYFEVSHDALYGALDRF 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,827
Number of Sequences: 5004
Number of extensions: 43832
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)