Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N19
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    27   9.7  

>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 217 MQSSYFFSGLVVNIVFNF*KVHGLEYVINS 306
           MQSSY   G V+N++  +   HG  Y  NS
Sbjct: 37  MQSSYLIVGAVLNVMIVYTVFHGNSYRDNS 66


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 310 VKKSRAAYRWCVRSLKGVEQSFSA-YGMS*LSNNYLHQHYLVEQ*FISSKNNNLYYDAVH 486
           +K S       +++L  +E    A Y ++  SNNYL +  L++   I SKN+N       
Sbjct: 244 IKSSNLETLGFLQNLDEIESGIEADYTINIDSNNYLSRLDLIKLKTIKSKNSNSDISLFQ 303

Query: 487 NFTSAVIPRF 516
           N    + P F
Sbjct: 304 NTKLCLDPEF 313


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 310 VKKSRAAYRWCVRSLKGVEQSFSA-YGMS*LSNNYLHQHYLVEQ*FISSKNNNLYYDAVH 486
           +K S       +++L  +E    A Y ++  SNNYL +  L++   I SKN+N       
Sbjct: 244 IKSSNLETLGFLQNLDEIESGIEADYTINIDSNNYLSRLDLIKLKTIKSKNSNSDISLFQ 303

Query: 487 NFTSAVIPRF 516
           N    + P F
Sbjct: 304 NTKLCLDPEF 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,181,056
Number of Sequences: 27780
Number of extensions: 241489
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)