Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N18
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   126   9e-30
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    57   9e-09
Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin...    29   2.0  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  126 bits (304), Expect = 9e-30
 Identities = 57/111 (51%), Positives = 75/111 (67%)
 Frame = +2

Query: 26  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 205
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 206 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAGYLQV 358
           +H+ +N+ +CP +N+++LW+LV ++ R K   AT GK PVI+  K GY +V
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKV 108



 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = +3

Query: 378 PKQPVIVKAKFFSKTAEQKIKAVGGVCVLSA 470
           P+ P+IVKA+FFS  AEQKIK  GG CVL A
Sbjct: 115 PETPLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 24/54 (44%), Positives = 38/54 (70%)
 Frame = +2

Query: 197 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAGYLQV 358
           MR +H+ +N+ +CP +N+++LW+LV ++ R K   AT GK PVI+  K GY +V
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKV 51



 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = +3

Query: 378 PKQPVIVKAKFFSKTAEQKIKAVGGVCVLSA 470
           P+ P+IVKA+FFS  AEQKIK  GG CVL A
Sbjct: 58  PETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = -3

Query: 345 PALTMLITGTLPSVADAYFSLACSETRVHS-LSRF-KTGQKSLFL--LMW*FLIP-SLPK 181
           P +T  +TGTLPS      +LA +E +  + +SR  K G+K  F     W  L+P S  K
Sbjct: 102 PRITAYLTGTLPSFGTVLTNLATAEMKTANWISRIQKIGKKVHFFGDDTWIRLLPRSFEK 161

Query: 180 YPG 172
           + G
Sbjct: 162 FEG 164


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = -3

Query: 345 PALTMLITGTLPSVADAYFSLACSETRVHS-LSRF-KTGQKSLFL--LMW*FLIP-SLPK 181
           P +T  +TGTLPS      +LA +E +  + +SR  K G+K  F     W  L+P S  K
Sbjct: 102 PRITAYLTGTLPSFGTVLTNLATAEMKTANWISRIQKIGKKVHFFGDDTWIRLLPRSFEK 161

Query: 180 YPG 172
           + G
Sbjct: 162 FEG 164


>AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin
           protein 3 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -1

Query: 290 LVLPAQRPESTVCQDLKQGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCD 144
           L  P   P S VC+      +PC+++  N+ Y    +    T     C+
Sbjct: 130 LSAPCTEPRSYVCETPSTHEDPCYYNYNNYCYTFSHNQSSFTTAQAICE 178


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 161 DKYHPGYFGKLGMRNYHMRRN 223
           D YH  YFGK G   YH+ RN
Sbjct: 405 DNYHNRYFGKAG---YHLTRN 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,481
Number of Sequences: 27780
Number of extensions: 202657
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)