Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_N16
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 71 5e-13
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 64 3e-11
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 57 5e-09
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 50 8e-07
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 38 0.003
02_02_0455 + 10445417-10446931,10447370-10447903,10448198-104482... 27 4.9
09_06_0040 - 20432008-20432091,20432152-20432229,20432322-204329... 27 6.4
03_01_0117 + 925850-925988,926075-926494,926607-926785,927568-92... 27 6.4
12_02_1197 + 26915933-26916298 27 8.5
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 27 8.5
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 27 8.5
03_01_0469 - 3613062-3613745,3613952-3614512,3614600-3614690,361... 27 8.5
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 70.5 bits (165), Expect = 5e-13
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 31/141 (21%)
Frame = +1
Query: 1 ARGEDVININKLRKLAFNGIPDDKGLRSMVWK-ILLHYLPKEKKAHETTLIKKRQLYKQF 177
A G V+++ +LR+LA G+PD G+R +VWK +LL YLP + L KKR Y F
Sbjct: 104 ALGRKVVDLAELRRLACQGVPDAAGVRPVVWKQLLLGYLPTDHALWAYELEKKRSQYSAF 163
Query: 178 --------------IDEIIVSPGGP----------------SDHPLNLSPDSSWSNFFKD 267
++E+ +S G +HPL+L S W+ FF++
Sbjct: 164 KDELLVNPSEVTRRMEEMTISKGNRHNSEGTGVLPRAEIVHDEHPLSLGKTSVWNQFFQE 223
Query: 268 NEVLLQIDHDVRRLCPDISFF 330
+E + QID DV+R P++ FF
Sbjct: 224 SETIEQIDRDVKRTHPEMQFF 244
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 64.5 bits (150), Expect = 3e-11
Identities = 40/116 (34%), Positives = 59/116 (50%)
Frame = +1
Query: 1 ARGEDVININKLRKLAFNGIPDDKGLRSMVWKILLHYLPKEKKAHETTLIKKRQLYKQFI 180
A + VI++++LR LA G+PD +R VWK+LL YLP ++ E L KKR Y F
Sbjct: 28 ALSKKVIDLDELRMLAAQGVPDGAAVRPTVWKLLLGYLPSDRALWEQELAKKRSQYAAFK 87
Query: 181 DEIIVSPGGPSDHPLNLSPDSSWSNFFKDNEVLLQIDHDVRRLCPDISFFQSATEF 348
+E + +P +E++ QID DV+R PD+ FF + F
Sbjct: 88 EEFLSNP---------------------YSEIIEQIDRDVKRTHPDMHFFCGDSSF 122
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 57.2 bits (132), Expect = 5e-09
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +1
Query: 1 ARGEDVININKLRKLAFNGIPDD-KGLRSMVWKILLHYLPKEKKAHETTLIKKRQLYKQF 177
A + V+N+ +LR+LA G+PD +R +VWK+LL YLP E+ L KKR Y +
Sbjct: 103 ALSKKVVNMGELRRLACLGVPDGGAAVRPLVWKLLLGYLPTERAFWPHELEKKRSQYSAY 162
Query: 178 IDEIIVSP 201
DE +++P
Sbjct: 163 KDEFLLNP 170
Score = 54.4 bits (125), Expect = 4e-08
Identities = 25/81 (30%), Positives = 48/81 (59%)
Frame = +1
Query: 94 KILLHYLPKEKKAHETTLIKKRQLYKQFIDEIIVSPGGPSDHPLNLSPDSSWSNFFKDNE 273
+ LL+ K ++ E+ L++K++L I + + +HPL+ S W+ +F+++E
Sbjct: 165 EFLLNPSEKIRRFEESKLLRKKELNSDKIGLLPRAKVTNEEHPLSFGKSSLWNQYFQESE 224
Query: 274 VLLQIDHDVRRLCPDISFFQS 336
+L QID DV+R P++ FF +
Sbjct: 225 ILEQIDRDVKRTHPEMPFFSA 245
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 50.0 bits (114), Expect = 8e-07
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Frame = +1
Query: 76 LRSMVWKILLHYLPKEKKA----HETTLIKKRQLYKQFIDEIIVSPGGPS---------- 213
LR + W++ L LP A H R+ Y ++V P P
Sbjct: 14 LRGVRWRVDLGILPASPGASVDEHRRAAADSRRRYVSLRRRLLVDPHVPKEEGRSSNLIV 73
Query: 214 DHPLNLSPDSSWSNFFKDNEVLLQIDHDVRRLCP-DISFFQSAT 342
D+PL+ +PDSSW FF+ E+ +D D+ RL P D S+FQ+ T
Sbjct: 74 DNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPT 117
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 38.3 bits (85), Expect = 0.003
Identities = 14/42 (33%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +1
Query: 214 DHPLNLSPDSSWSNFFKDNEVLLQIDHDVRRLCPDI-SFFQS 336
++PL+ +P+S+W +F++ E+ ++ D+ RL P++ +FFQ+
Sbjct: 73 ENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQT 114
>02_02_0455 +
10445417-10446931,10447370-10447903,10448198-10448278,
10448699-10448770,10449643-10449669
Length = 742
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 182 SINCLYNCLFFIRVVSCAFFSLGK*CNKIFQTIERS--PLSSGIPLKASFLNLLMLM 18
++NCL N +F+ CAF S + + I RS P G PL A L L+ M
Sbjct: 359 TVNCLQNDIFWDFFKLCAFGSDSSNNDPELECIGRSILPKLKGSPLAAKTLGRLLRM 415
>09_06_0040 -
20432008-20432091,20432152-20432229,20432322-20432941,
20433042-20433108,20433276-20433291,20433781-20433887,
20433989-20434037,20435059-20435142,20435288-20435384,
20435914-20435985,20436075-20436435,20437864-20438259
Length = 676
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 286 IDHDVRRLCPDISFFQSATEFPCDEIVNQ*WCKK 387
+ H+V LCP+ Q CDE V Q C++
Sbjct: 454 LGHNVNSLCPESCIEQDEPIIMCDEKVEQEKCEE 487
>03_01_0117 +
925850-925988,926075-926494,926607-926785,927568-927686,
928180-928498
Length = 391
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 208 PSDHPLNLSPDSSWSNFFKDNEVLLQIDHDVRRLCPDISFFQSATE 345
P+D + SW F +NE I R+CP+I+ F SA E
Sbjct: 30 PADIVRAAAVSRSWRRFVVENEFSKSI---CLRICPEIANFTSAEE 72
>12_02_1197 + 26915933-26916298
Length = 121
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 181 DEIIVSPGGPSDHPLNLSPDSSWSN 255
D ++V+PGG D L ++ +S+W N
Sbjct: 6 DVLVVAPGGGRDALLLVAQESAWRN 30
>03_05_1133 -
30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 10 EDVININKLRKLAFNGIPDDKGLRSMVWKILLHYLPKEKKAHETTLIK 153
ED++ + + N + DD G + VWK LP+++K TTL++
Sbjct: 452 EDILERTGYKLTSSNQL-DDYG-QDKVWKTQRQLLPRKRKNQITTLVE 497
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 163 LYKQFIDEIIVSPGGPSDHPLNLSPDSSWSNF 258
L+K F D+II +PG + + + D+SW F
Sbjct: 598 LFKSF-DDIIKNPGRKTTVEVGMLADNSWKKF 628
>03_01_0469 -
3613062-3613745,3613952-3614512,3614600-3614690,
3614782-3614870,3614962-3615027,3615309-3615423,
3615521-3615966
Length = 683
Score = 26.6 bits (56), Expect = 8.5
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +1
Query: 91 WKIL---LHYL-PKEKKAHETTLIKKRQLYKQFIDEIIVSPGGPSD 216
WK+L + YL PKE++ +E + K+ LYK +I+ + GP +
Sbjct: 257 WKLLQQCIRYLGPKEREFYEVVIENKKLLYK-MSRKIVDTSEGPKN 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,354,815
Number of Sequences: 37544
Number of extensions: 213505
Number of successful extensions: 548
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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