Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N15
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    68   9e-13
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   3.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.3  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 67.7 bits (158), Expect = 9e-13
 Identities = 30/47 (63%), Positives = 34/47 (72%)
 Frame = +2

Query: 353 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTP 493
           MGRMH+ GKGI+ SALPY RS P W K  AD V EQI K  KKG++P
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSP 47


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 134 LDIIKVHTTYFIHNFKTICLCI 69
           + IIK H T++ H    +C+C+
Sbjct: 326 MGIIKPHLTFYGHEGPVLCVCV 347


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 427 PGRDTAAVRQRRLGYTLARCVHTTHI 350
           P R T A R+R L YT ++  H+T +
Sbjct: 553 PQRATPASRERVLPYTRSQAFHSTSL 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,602
Number of Sequences: 5004
Number of extensions: 30313
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)