Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N15
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95...    66   2e-11
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009...    63   1e-10
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95...    41   5e-04
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    31   0.67 
05_05_0242 - 23559862-23560396,23560420-23560580                       27   8.3  
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175...    27   8.3  

>08_01_0119 -
           951492-951679,951780-951918,952023-952095,952196-952218
          Length = 140

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 28/47 (59%), Positives = 35/47 (74%)
 Frame = +2

Query: 353 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTP 493
           MGRMH+ GKGIS SA+PY+R+ P+W+K  A DV+E I K  KKG  P
Sbjct: 1   MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMP 47


>07_03_0978 +
           23099690-23100108,23100530-23100564,23100868-23100926,
           23101269-23101310,23102003-23102065,23102172-23102253,
           23102570-23102609,23102657-23102753
          Length = 278

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/47 (55%), Positives = 35/47 (74%)
 Frame = +2

Query: 353 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTP 493
           MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG  P
Sbjct: 1   MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLP 47


>08_01_0120 -
           957365-957552,957642-957780,957847-957970,958398-958486
          Length = 179

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +2

Query: 377 KGISQSALPYRRSVPTWLKLTADDV 451
           KGIS SALPY+R+ P+WLK  A DV
Sbjct: 31  KGISSSALPYKRTPPSWLKTAASDV 55


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 430 QPGRDTAAVRQRRLGYTLARCVHTTHI 350
           +P   TAA RQ+ + YT   C HT+H+
Sbjct: 88  KPEESTAAGRQKPVLYTFINCCHTSHL 114


>05_05_0242 - 23559862-23560396,23560420-23560580
          Length = 231

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 131 DIIKVHTTYFIHNFKTICL 75
           D++ +H T FI+ +K IC+
Sbjct: 47  DLLSLHATLFIYTYKIICI 65


>04_04_0842 +
           28616729-28617078,28617166-28617359,28617416-28617582,
           28617693-28617928,28618049-28618160
          Length = 352

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 486 RPFLPSLKICSLTSSAVSFNQVGTLRRYGSADW 388
           R FL  L    L  + V      TLR+YG+ DW
Sbjct: 94  RSFLRRLSFQPLRENPVLGPSAATLRKYGALDW 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,126,265
Number of Sequences: 37544
Number of extensions: 185079
Number of successful extensions: 368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)