Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_N14
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 38 0.001
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 33 0.036
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 30 0.19
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 27 1.4
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 27 1.4
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 27 1.8
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 3.1
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 25 7.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.5
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 9.5
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 9.5
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +3
Query: 351 HSKL-----WVIEKAVSLALVP--LIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
HSKL W E+ +++A+VP +IP+ + L D+ +A + H+ G E+ +DY
Sbjct: 79 HSKLHGSYHWDFERIIAIAMVPQVMIPLFTGTSHPLMDAALACTLITHAHLGFESCVIDY 138
Query: 510 VRASMYGPVIP 542
A + + P
Sbjct: 139 FPARRFKKLSP 149
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 32.7 bits (71), Expect = 0.036
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +3
Query: 177 SQQLMKLATQPAVAQRTITSTLPIRSLVVKEAKSTPILNSVRAFRTSMVRLSGEKAHDHS 356
+ +L LA ++ R + LP +SLV KEA ++NS F + + SGE A +++
Sbjct: 9 TSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKA-MINSATLFVSFLTSASGEIATNNN 67
Query: 357 KLWVIEKAVSLAL 395
+ ++ + V AL
Sbjct: 68 RKILMPQDVLNAL 80
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 30.3 bits (65), Expect = 0.19
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Frame = +3
Query: 225 TITSTLPIRSLVVKEAKSTPILNSVRAFRTSMVRLSGEKAHDHSKLWVIEKAVSLALVPL 404
TI ST RSL + ILN + + + SM KA S + + EK ++L +
Sbjct: 1940 TIKSTSQKRSL-----RGKSILNVLHSRKLSMSSKVDIKALSQSAILITEKLINLCNTRI 1994
Query: 405 IPVALMMPNK-----LFDSLVAILITAHSFWGLEAIAVDYVRASMY 527
++ M K FD V ++I A SF + A D RAS Y
Sbjct: 1995 NSKSVKMSLKDHFRLSFDDPVDLVIPAKSFLDITLPAKDANRASHY 2040
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 128 GLLNVFSDTSMHESGILPAADEACDAAGSRSTHHNKHSSHKES 256
G +N +S+ H + D+ GS ++ N H++H ES
Sbjct: 34 GSVNEYSEQQRHGTNSFNGKPSVHDSVGSDASVSNGHNNHNES 76
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 96 NSVLRKKTIVMAFSMFFRTPACTSRVFSQQLMKLATQPAVAQRTITSTLPIRSLVVKEAK 275
N+V K+ ++ + TPACT+R F ++ + + + ++ T I +KE K
Sbjct: 378 NTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVE--LIDEVVSLTKKINEAALKEGK 435
Query: 276 S 278
S
Sbjct: 436 S 436
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 193 FISCWENTRLVHAGVRKNIEK 131
F+S + +H GVRKN+EK
Sbjct: 87 FVSLYNKLLRIHMGVRKNLEK 107
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 146 SDTSMHESGILPAADEACDAAGSRST 223
S SMH S ++ A C GS+ST
Sbjct: 817 SSLSMHHSSVVQAVMHICSQMGSKST 842
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 432 KLFD-SLVAILITAHSFWGLEAIAVDYVRASMYGPVI 539
+LFD S +A LI AH+ W L + + + +YG V+
Sbjct: 277 ELFDFSPIANLIDAHALWHLSTVPITHY---LYGFVV 310
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 204 QPAVAQRTITSTLPIRSLVVKEAKSTPILNSVRAF 308
Q A+ TIT TLP+ + E +S + N F
Sbjct: 3575 QTTFAKDTITITLPLNIIFFSEVQSNELENKASKF 3609
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 146 SDTSMHESGILPAADEACDAAGSRSTHHNKHSSHKESCGQR 268
S +S S L ++ + S S+H + SSHK S +
Sbjct: 373 SSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSK 413
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 388 KDTAFSITHSFEWS*AFSPDS 326
KD A+S+ EW+ A+SPDS
Sbjct: 533 KDEAYSL--GMEWANAYSPDS 551
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 249 RSLVVKEAKSTPILNSVRAFRTSMVRLSGEKAHD 350
R L V + P+L++ A + +M G AHD
Sbjct: 524 RDLSVHNVGTLPVLSAAAATQAAMPHTMGPSAHD 557
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 80 IRIFPKFSA*EENDRNGLLNVFSDTSMHESGILPAA 187
I +P+++ + N NGL + S +S+ E+G P A
Sbjct: 490 ISSYPQYTMEDLNRSNGLPVIVSPSSLIENGFHPIA 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,167
Number of Sequences: 5004
Number of extensions: 49277
Number of successful extensions: 123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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