Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N14
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0054 + 22400278-22400420,22400545-22401037                       31   0.79 
01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568     30   1.4  
02_04_0164 + 20484911-20485147,20486639-20487150,20487311-204873...    29   1.8  
01_07_0235 + 42198662-42199615,42200129-42200746                       28   4.2  
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413...    28   5.5  
03_05_0799 + 27809301-27811550                                         28   5.5  
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    27   7.3  
12_02_0277 + 16682836-16684368                                         27   7.3  
12_02_0275 + 16662206-16663738                                         27   7.3  
02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495     27   9.7  

>04_04_0054 + 22400278-22400420,22400545-22401037
          Length = 211

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -2

Query: 261 PQDSLWEECLLWCVERLPAASQASSAAGRIPDSCMLVSEKTLRRPLRSFSS 109
           P+ + +  C  WC+ R PA + A+ AAG +    M+    T+RR   S SS
Sbjct: 55  PRATAYRRCN-WCLVREPAPAAAAGAAGHV--HAMVDKPTTVRRKTASSSS 102


>01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568
          Length = 585

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = -2

Query: 252 SLWEECLLWCVERLPAASQASSAAGRIPDSCMLVSEKTLRRPLRSFSS*ALNLGKIRIYN 73
           SL   CLLW    LPA  +      R  D C LV     + PL   S   +++G   I  
Sbjct: 93  SLAGMCLLWLTAILPADRRTPECEAR-RDDCQLV---PWQLPLLFASFVLMSVGSGGIRP 148

Query: 72  CIISHVASRCFRNSPKLRHVKT 7
           C ++  A +  R     R+V+T
Sbjct: 149 CALAFGADQLDRRDNSARNVRT 170


>02_04_0164 +
           20484911-20485147,20486639-20487150,20487311-20487399,
           20487586-20487770,20487856-20487894,20488000-20488038
          Length = 366

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/81 (25%), Positives = 32/81 (39%)
 Frame = +3

Query: 120 IVMAFSMFFRTPACTSRVFSQQLMKLATQPAVAQRTITSTLPIRSLVVKEAKSTPILNSV 299
           IV+ F   F    C  R     L+K  +   V + + TST P      +    TPI+N++
Sbjct: 224 IVVDFKDLF--DLCRLRAVDTSLLKCYSLMTVKEWSTTSTTPCGPAKTRSTLCTPIINTI 281

Query: 300 RAFRTSMVRLSGEKAHDHSKL 362
                  V+  G +   H  L
Sbjct: 282 DEAWAQYVQRGGLRKTGHDTL 302


>01_07_0235 + 42198662-42199615,42200129-42200746
          Length = 523

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +3

Query: 87  FSLNSVLRKKTIVMAFSMFFRTPACTSRVFSQQLMKLATQPAVAQRTITSTLPIRSLVVK 266
           F+  S     TI+ A S   RTP    R  S+    L  +  V++  I   L    LV++
Sbjct: 321 FAAGSETTSTTIIWAMSELVRTPHVMERAQSEIRQVLQGKTVVSEADIEGRLHYLQLVIR 380

Query: 267 E 269
           E
Sbjct: 381 E 381


>05_03_0442 +
           14040280-14040371,14040449-14040517,14041217-14041329,
           14043110-14043209,14044508-14044682,14044768-14044881,
           14045157-14045287,14048401-14048464,14048585-14048624,
           14049002-14049225,14049634-14049876,14050145-14050313,
           14050569-14050873,14051325-14051511,14051622-14051775,
           14052145-14052207,14052300-14052396,14052500-14052589
          Length = 809

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/95 (24%), Positives = 43/95 (45%)
 Frame = +3

Query: 114 KTIVMAFSMFFRTPACTSRVFSQQLMKLATQPAVAQRTITSTLPIRSLVVKEAKSTPILN 293
           K  +MA   FFR   CTS++        +T+  +  +T TS    + ++ +   S  IL+
Sbjct: 221 KACLMAVGFFFRHRFCTSKIKMATTTICSTRKTILAQT-TSYSWYKRIIPESILSAVILS 279

Query: 294 SVRAFRTSMVRLSGEKAHDHSKLWVIEKAVSLALV 398
           + +A +  MV L+        K  V  + V ++ +
Sbjct: 280 TKKALK--MVVLAASIISKSGKALVSRQFVDMSRI 312


>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 287 YGRRFSLFDHKTPYGKSACYGALSDCRL 204
           YGRR  + +H+TP   +A YG+L+  RL
Sbjct: 86  YGRR-KVLEHRTPLMVAATYGSLAVLRL 112


>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
            23192186-23193097,23193190-23193346,23193540-23193694,
            23194667-23194819,23195334-23195627,23195711-23195896,
            23196062-23196662,23196868-23196992,23197101-23197197,
            23197299-23197411,23198129-23198233
          Length = 1176

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 69   YNYKFEFSLNSVLRKKTIVMAFSMFFRTPACTSRVFSQQLMKLATQP 209
            Y Y+ + +  +  + K    A S+F  T   T+R   ++LMK  T P
Sbjct: 1097 YKYRVKITPGTAKKGKAAKTAMSLFLHTADATNR--EKELMKACTDP 1141


>12_02_0277 + 16682836-16684368
          Length = 510

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -3

Query: 290 EYG----RRFSLFDHKTPYGKSACYGALSDCRLRRKLHQLLGEYP 168
           EYG    RR  +FD  + Y +SAC G  S  +L+ KL   +G+ P
Sbjct: 57  EYGEERFRRNKMFDAVSTYLRSACLG--SATKLKAKLGNNIGDDP 99


>12_02_0275 + 16662206-16663738
          Length = 510

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -3

Query: 290 EYG----RRFSLFDHKTPYGKSACYGALSDCRLRRKLHQLLGEYP 168
           EYG    RR  +FD  + Y +SAC G  S  +L+ KL   +G+ P
Sbjct: 57  EYGEERFRRNKMFDAVSTYLRSACLG--SATKLKAKLGNNIGDDP 99


>02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495
          Length = 593

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 234 LLWCVERLPAASQASSAAGRIPDS 163
           LLWC+  LPA +++ SAA   P S
Sbjct: 13  LLWCLCALPAPARSQSAATPAPAS 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,757
Number of Sequences: 37544
Number of extensions: 319083
Number of successful extensions: 817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)