Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N14
         (544 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358788-1|AAQ89148.1|  159|Homo sapiens AVLL5809 protein.             48   3e-05
CR456932-1|CAG33213.1|  159|Homo sapiens SDHD protein.                 46   6e-05
BT007238-1|AAP35902.1|  159|Homo sapiens succinate dehydrogenase...    46   6e-05
BC071756-1|AAH71756.1|  159|Homo sapiens succinate dehydrogenase...    46   6e-05
BC071755-1|AAH71755.1|  159|Homo sapiens succinate dehydrogenase...    46   6e-05
BC022350-1|AAH22350.1|  159|Homo sapiens succinate dehydrogenase...    46   6e-05
BC015992-1|AAH15992.1|  159|Homo sapiens succinate dehydrogenase...    46   6e-05
BC015188-1|AAH15188.1|  159|Homo sapiens succinate dehydrogenase...    46   6e-05
BC012603-1|AAH12603.1|  159|Homo sapiens succinate dehydrogenase...    46   6e-05
BC009574-1|AAH09574.1|  159|Homo sapiens succinate dehydrogenase...    46   6e-05
BC005263-1|AAH05263.1|  159|Homo sapiens succinate dehydrogenase...    46   6e-05
AB026906-1|BAA81889.1|  159|Homo sapiens small subunit of cytoch...    46   6e-05
AB006202-1|BAA22054.1|  159|Homo sapiens cytochrome b small subu...    46   6e-05
BC070307-1|AAH70307.1|  159|Homo sapiens succinate dehydrogenase...    46   9e-05

>AY358788-1|AAQ89148.1|  159|Homo sapiens AVLL5809 protein.
          Length = 159

 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 25/61 (40%), Positives = 33/61 (54%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ LIP   + P  + D  +A  +T HS WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>CR456932-1|CAG33213.1|  159|Homo sapiens SDHD protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BT007238-1|AAP35902.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BC071756-1|AAH71756.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BC071755-1|AAH71755.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BC022350-1|AAH22350.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BC015992-1|AAH15992.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BC015188-1|AAH15188.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BC012603-1|AAH12603.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BC009574-1|AAH09574.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BC005263-1|AAH05263.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>AB026906-1|BAA81889.1|  159|Homo sapiens small subunit of
           cytochrome b of succinate dehydrogenase protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>AB006202-1|BAA22054.1|  159|Homo sapiens cytochrome b small subunit
           of complex II protein.
          Length = 159

 Score = 46.4 bits (105), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS+ L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


>BC070307-1|AAH70307.1|  159|Homo sapiens succinate dehydrogenase
           complex, subunit D, integral membrane protein protein.
          Length = 159

 Score = 46.0 bits (104), Expect = 9e-05
 Identities = 24/61 (39%), Positives = 31/61 (50%)
 Frame = +3

Query: 330 SGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDSLVAILITAHSFWGLEAIAVDY 509
           SG KA   S  W  E+ VS  L+ L+P A + P    D  +A  +T H  WGL  +  DY
Sbjct: 57  SGSKAA--SLHWTSERVVSFLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDY 114

Query: 510 V 512
           V
Sbjct: 115 V 115


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,804,299
Number of Sequences: 237096
Number of extensions: 1703203
Number of successful extensions: 3223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3223
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)