Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N14
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-4|CAB04259.1|  145|Caenorhabditis elegans Hypothetical pr...    52   3e-07
U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    28   3.8  
Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z36282-4|CAI06055.2|  801|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z31590-10|CAA83466.3|  801|Caenorhabditis elegans Hypothetical p...    27   8.7  
DQ104391-1|AAZ08414.1|  801|Caenorhabditis elegans CNK-1 protein.      27   8.7  

>Z81525-4|CAB04259.1|  145|Caenorhabditis elegans Hypothetical
           protein F33A8.5 protein.
          Length = 145

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
 Frame = +3

Query: 270 AKSTPILNS-VRAFRTSMVRLSGEKAHDHSKLWVIEKAVSLALVPLIPVALMMPNKLFDS 446
           A+S P +++ VRA  TS +     K  DHS  + +E+  ++ ++P++P +  +   + D+
Sbjct: 18  ARSAPRISTIVRA--TSTLNDGASKVPDHSMHFKLERLWAVGMLPILPASYFIHGPVMDA 75

Query: 447 LVAILITAHSFWGLEAIAVDYVRASMYG 530
           ++ + +T H  WG+  +  DY R  + G
Sbjct: 76  VLTVALTLHIHWGIHGVVYDYARPYVIG 103


>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/81 (20%), Positives = 38/81 (46%)
 Frame = -1

Query: 292 LSMGVDLASLTTRLLMGRVLVMVR*ATAGCVASFISCWENTRLVHAGVRKNIEKAITIVF 113
           + + V    +T   LM  + V +      CVAS++  W   R   AG+ K++++ + +  
Sbjct: 164 MELVVSRGIITRNTLMALITVAI--TCLICVASYVIMWITLRKHSAGITKSVQRELLLAV 221

Query: 112 FLSTEFRENSNL*LYYIPRSF 50
            + +       + LYY+ +++
Sbjct: 222 QVFSLLCAFFIMFLYYLLQNY 242


>Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical
           protein F35E12.7d protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 117 TIVMAFSMFFRTPACTSRVFSQQLMKLATQPAVAQRTITSTLPIRSLVVKEAKSTPI 287
           T V+    F   P  TS       +  +T P V+  T+TST+  +S+V     S+PI
Sbjct: 479 TTVVPSGSFSTAPIVTSVSTRATRVSSSTAPVVS--TVTSTITSQSIVTTNKSSSPI 533


>Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical
           protein F35E12.7a protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 117 TIVMAFSMFFRTPACTSRVFSQQLMKLATQPAVAQRTITSTLPIRSLVVKEAKSTPI 287
           T V+    F   P  TS       +  +T P V+  T+TST+  +S+V     S+PI
Sbjct: 479 TTVVPSGSFSTAPIVTSVSTRATRVSSSTAPVVS--TVTSTITSQSIVTTNKSSSPI 533


>Z36282-4|CAI06055.2|  801|Caenorhabditis elegans Hypothetical
           protein R01H10.8 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 84  EFSLNSVLRKKTIVMAFSMFFRTPACTSRVFSQQL-MKLATQPAVAQRTITSTLPIRSLV 260
           +  ++++  +KTI  A S+       +     Q+L  ++ T     +RT+TS + +R   
Sbjct: 99  KIGISALGARKTIFQAVSLLLYFCHESEHENLQRLAQQVKTSCLYVERTMTSAMRMREKA 158

Query: 261 VKEAKSTPILNSV 299
           ++ ++   ILNSV
Sbjct: 159 IRRSEIVNILNSV 171


>Z31590-10|CAA83466.3|  801|Caenorhabditis elegans Hypothetical
           protein R01H10.8 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 84  EFSLNSVLRKKTIVMAFSMFFRTPACTSRVFSQQL-MKLATQPAVAQRTITSTLPIRSLV 260
           +  ++++  +KTI  A S+       +     Q+L  ++ T     +RT+TS + +R   
Sbjct: 99  KIGISALGARKTIFQAVSLLLYFCHESEHENLQRLAQQVKTSCLYVERTMTSAMRMREKA 158

Query: 261 VKEAKSTPILNSV 299
           ++ ++   ILNSV
Sbjct: 159 IRRSEIVNILNSV 171


>DQ104391-1|AAZ08414.1|  801|Caenorhabditis elegans CNK-1 protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 84  EFSLNSVLRKKTIVMAFSMFFRTPACTSRVFSQQL-MKLATQPAVAQRTITSTLPIRSLV 260
           +  ++++  +KTI  A S+       +     Q+L  ++ T     +RT+TS + +R   
Sbjct: 99  KIGISALGARKTIFQAVSLLLYFCHESEHENLQRLAQQVKTSCLYVERTMTSAMRMREKA 158

Query: 261 VKEAKSTPILNSV 299
           ++ ++   ILNSV
Sbjct: 159 IRRSEIVNILNSV 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,089,408
Number of Sequences: 27780
Number of extensions: 275746
Number of successful extensions: 627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)