Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_N13
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 0.79
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 1.4
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 27 1.4
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 4.2
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 25 5.5
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 5.5
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 7.3
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 24 7.3
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 24 9.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 24 9.7
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 24 9.7
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 24 9.7
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 0.79
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 30 TFLDLPGHCLLLNKDRITAGDGVKA 104
T LDL G+ LLL+K+ G+ VKA
Sbjct: 56 TILDLGGNVLLLDKNTAFGGNSVKA 80
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 251 YRDHFTFLRYERCR*CYFLKCCFDAD*L*YFEHFGRCLIG 132
Y+ F + R+ C Y C DAD FEH R + G
Sbjct: 332 YKKSFRWFRFSCCDRVYPCDECHDADQNHTFEHANRIICG 371
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 16 RHE--AEPSLIYPVTAYC*TRIGSPREMESRHTIWKARR 126
+HE +P ++ YC + GS + R+T W A +
Sbjct: 138 KHEFATKPQIVTMAQPYCDSSFGSATDRNMRYTAWSAMK 176
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 4.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 102 AHDLEGKAAISNQTTAKVFEILQSVGIKTAFQKIASPTA 218
AH L KA S+ +T F L S TA + SPT+
Sbjct: 17 AHSLHKKANNSSSSTTGAFPQLTSFTKPTATNGVDSPTS 55
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 307 FPKALDSHRPSKKP-SIRTTQTTTRNGPN 390
+P++LD H SKKP S + + T + PN
Sbjct: 427 YPQSLDDHLSSKKPISYFSNKLTHQTLPN 455
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 24.6 bits (51), Expect = 5.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 128 YLQSDNGQSVRNITISRHQNSISK 199
YL DNGQS RN IS I K
Sbjct: 71 YLSQDNGQSWRNGVISGQVCPIKK 94
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 7.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 275 SEASRYPFYRDHFTFLRYE 219
+ +SRYPFY+ H L E
Sbjct: 22 TNSSRYPFYKKHLLELNSE 40
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -2
Query: 340 CLXG-VNLKPSETPGFLFRKEP 278
CL G +NLKPSE LF + P
Sbjct: 861 CLRGFLNLKPSELERELFSRSP 882
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 23.8 bits (49), Expect = 9.7
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +1
Query: 19 HEAEPSLIYPVTAY 60
HE +PSL+YP +++
Sbjct: 88 HEEQPSLVYPSSSF 101
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 23.8 bits (49), Expect = 9.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 78 ITAGDGVKAHDLEGKAAISNQTTAKVFEILQSVGIKTAFQKIA 206
+ A A L + + SN TAK IL VG+ F I+
Sbjct: 16 VLASSADAAPTLYKRKSKSNTNTAKSVAILDGVGVNNTFGVIS 58
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.8 bits (49), Expect = 9.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 286 KEPVARRLVTHSIGIISHFFAMNAVGDAIF*NAVLMPTDCNISNTLAVV 140
KE +A+ T I + HF A+ AVG+++ L D NI T+ ++
Sbjct: 67 KEGLAQIFDTFKIKGVIHFAALKAVGESM--KLPLEYYDNNICGTITLL 113
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 351 YKDDANHDPQWSE 389
Y DAN DP WSE
Sbjct: 498 YGTDANGDPLWSE 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,468
Number of Sequences: 5004
Number of extensions: 31984
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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