Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_N13
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889... 38 0.004
03_01_0232 + 1824517-1825506 30 0.76
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 29 1.3
08_02_1180 + 24980042-24980784,24980874-24981168,24981650-249818... 29 1.8
01_06_1457 + 37508187-37508421,37509012-37509109,37509791-375099... 29 1.8
06_03_0086 + 16458881-16458952,16461795-16461966,16462621-164628... 27 5.4
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 27 7.1
11_03_0053 + 9339386-9339781 26 9.4
05_04_0081 + 17759158-17760021 26 9.4
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 26 9.4
>09_04_0447 +
17688248-17688319,17688414-17688515,17688852-17688981,
17689198-17689290,17689363-17689451,17689889-17689969,
17690118-17690207,17690653-17690772,17690877-17690927,
17691125-17691171,17691321-17691378,17691451-17691507
Length = 329
Score = 37.5 bits (83), Expect = 0.004
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +3
Query: 51 HCLLLNKDRITAGDGVKAHDLEGKAAISNQTTAKVFEILQSVGIKTAFQKIASP--TAFI 224
H +L+ DR +A D V A + K + N+T+ F+ + + T ++SP I
Sbjct: 34 HLVLVTTDRQSAFDRVLA-SIPFKGQVLNETSLWWFDRTRHI---TPNAVVSSPDKNVTI 89
Query: 225 AKKCEMIPIEWVTRRLATGS 284
AK+C + P+E+V R TGS
Sbjct: 90 AKRCSVFPVEFVVRGYVTGS 109
>03_01_0232 + 1824517-1825506
Length = 329
Score = 29.9 bits (64), Expect = 0.76
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 84 AGDGVKAHDLEGKAAISNQTTAKVFEILQSVGIKTAFQKIASPTAFIAKKCEMIPIEWV 260
+G+ A + + +A F L S +A + +ASPTA K + P+ WV
Sbjct: 190 SGEAALAEAVGAATCAAAAASASFFAGLASASASSASRSLASPTAASPAKVAVAPVWWV 248
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 83 RGRWSQGTRSGRQGGYLQSDNGQSVRNITISRHQNSISKNSITDSVHSEE 232
+G GT+ G + GY Q S + I+ +++SK+ I S+ ++E
Sbjct: 486 KGMIESGTKQGLREGYAQFTEVLSQKTKVIAPDDSNLSKDEILSSLQTQE 535
>08_02_1180 +
24980042-24980784,24980874-24981168,24981650-24981823,
24981999-24982187,24982290-24982403,24982517-24982837,
24983485-24983542,24984216-24984337
Length = 671
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 311 GNAWISLQEGASSEASRYPFYRDHFTFLRY 222
G+A + Q G S E +RY F R+ TFL +
Sbjct: 590 GSAHFTAQRGVSMENARYTFLRECTTFLAH 619
>01_06_1457 +
37508187-37508421,37509012-37509109,37509791-37509904,
37510361-37510426,37510659-37510745,37510902-37511012
Length = 236
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 320 KAFGNAWISLQEGASSEASRYPFYRDHFT 234
KAFG++W + + A+ A ++PF D T
Sbjct: 118 KAFGDSWKAATKDATDAAQQWPFLTDALT 146
>06_03_0086 +
16458881-16458952,16461795-16461966,16462621-16462889,
16463045-16463316,16463409-16463533,16463852-16463964,
16464579-16464692
Length = 378
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 42 LPGHCLLLNKDRITAGDGVKAHDLEGK 122
LPGH ++N + AG + +DLEGK
Sbjct: 166 LPGHHQIVNGEWNVAGIAHRTYDLEGK 192
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 346 VSCLXGVNLKPSETPGFLFRKEPVARRLVTHSIGIISH 233
+S L G +LK S PG + R+EP A L+ +S+ H
Sbjct: 248 LSPLHGSSLKVSRRPGVIGRREPQA--LLEYSVNSSEH 283
>11_03_0053 + 9339386-9339781
Length = 131
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 83 RGRWSQGTRSGRQGGYLQSDNGQSVRNITISRHQNSI 193
+GR R+ R GGY + S R SRH I
Sbjct: 67 KGRSMSSFRTARNGGYPRQSQAASARVHRTSRHTGGI 103
>05_04_0081 + 17759158-17760021
Length = 287
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 56 PTAEQG*DHRGRWSQGTRSGRQGGYLQSD 142
P + QG H+G W+Q + QG +LQ +
Sbjct: 76 PPSFQGIPHQGNWAQPNLATLQGFHLQEN 104
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 71 G*DHRGRWSQGTRSGRQGGYLQSDNGQSVRNITIS 175
G RGR +G+R G +GG +S G+ R I+IS
Sbjct: 1342 GSGRRGR-GRGSRGGSRGGRGRSRGGRVPRGISIS 1375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,078,618
Number of Sequences: 37544
Number of extensions: 219941
Number of successful extensions: 583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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