Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N13
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...   152   8e-38
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    26   8.4  
AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical ...    26   8.4  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score =  152 bits (369), Expect = 8e-38
 Identities = 67/114 (58%), Positives = 90/114 (78%)
 Frame = +3

Query: 51  HCLLLNKDRITAGDGVKAHDLEGKAAISNQTTAKVFEILQSVGIKTAFQKIASPTAFIAK 230
           + L+ +KD +TA + V+ ++LEGK+ I+++TT+ VFE LQ +G+ T F+K  S T F+A+
Sbjct: 34  YVLIRSKDSLTAFNAVRKNELEGKSRIASKTTSNVFEYLQLLGLPTHFEKSISETEFVAR 93

Query: 231 KCEMIPIEWVTRRLATGSFLKRNPGVSEGFRFTPXKQETFYKDDANHDPQWSEQ 392
           KC MIPIEWV RR+ATGSFLKRNPGV EGFRF   K ETF+KDDAN DPQW+++
Sbjct: 94  KCTMIPIEWVARRVATGSFLKRNPGVKEGFRFNDLKLETFFKDDANDDPQWTDE 147


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 195 QKIASPTAFIAKKCEMIPIEWVTRRLATGSFLKRNPGVSE 314
           Q + +P    A    M P E + R+L+ G  +  NP VS+
Sbjct: 312 QMLMTPQVTTASSTGMFPFEDIDRKLSNGDSMLINPAVSQ 351


>Z79603-5|CAB01891.1|  435|Caenorhabditis elegans Hypothetical
           protein M163.5 protein.
          Length = 435

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 149 QSVRNITISRHQNSISKNSITDSVHSEEM*NDPYRMGNETP 271
           QS    + +RH N  S NS   SVHSE   +   R     P
Sbjct: 261 QSANYSSFNRHLNKNSTNSKPKSVHSESRDSSKQRSTTTNP 301


>U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical
           protein ZK563.5 protein.
          Length = 239

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 90  DGVKAHDLEGKAAISNQTTAKVFEILQSVGIKTAFQKIASPTAFIAKKC 236
           D +  HD++   A+     A+VF  L + GIK A    AS       +C
Sbjct: 51  DAIDKHDVDTLCAMWESWNARVFHSLDTEGIKQAQCYEASAYRLFLVRC 99


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 313 SETPGFLFRKEPVARRLVTHSIGIISHF 230
           +E P  LF+K P   RLVT +I II+ F
Sbjct: 80  NEDPATLFKKLPAVARLVT-AIAIINGF 106


>AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical
           protein Y34D9A.3 protein.
          Length = 639

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 207 SPTAFIAKKCEMIPIEWVTRRLATGSFLKRNP 302
           SP   I + CE I I+   R L   SFLK NP
Sbjct: 463 SPMEIIEEICEKIRIKSNFRHLPDISFLKPNP 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,174,723
Number of Sequences: 27780
Number of extensions: 182876
Number of successful extensions: 472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)