Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N13
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   0.95 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   3.8  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   3.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 170 ISRHQNSISKNSITDSVHSEEM*NDPYRMGNETPR 274
           +  H  S++K S T  + S  +    +R+G +TP+
Sbjct: 423 LRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPK 457


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 303 GVSEGFRFTPXKQETFYKDDANHDPQWS 386
           G  +GF     + +   +DDA H P  S
Sbjct: 404 GSPDGFESVTSQYKNIREDDARHIPHAS 431


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 353 IEGFLLGRCESKAFGNAWISLQEG 282
           I+GF+L R +      AW  + +G
Sbjct: 5   IDGFVLNRIQYAILNEAWRLVADG 28


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 30  TFLDLPGHCLLLN 68
           TFLD PGH   ++
Sbjct: 196 TFLDTPGHAAFIS 208


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 328  HRPSKKPSIRTTQTTTRN 381
            H P   P I  T TTT +
Sbjct: 1364 HAPPHSPQITLTATTTNS 1381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,731
Number of Sequences: 438
Number of extensions: 2165
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)