Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_N12
         (230 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical pr...    27   1.4  
U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z50070-8|CAA90397.1|  263|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    25   7.2  
U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical...    25   9.5  

>U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical
           protein F26B1.2c protein.
          Length = 380

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 74  EGKNMCCGRRRIFTGCSPAGDIRPVGNEGLLRN 172
           E +  C  R +IFTGC+P    R +   G  +N
Sbjct: 132 ELREKCSARLKIFTGCAPGSTDRVLITSGEQKN 164


>U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical
           protein F26B1.2a protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 74  EGKNMCCGRRRIFTGCSPAGDIRPVGNEGLLRN 172
           E +  C  R +IFTGC+P    R +   G  +N
Sbjct: 149 ELREKCSARLKIFTGCAPGSTDRVLITSGEQKN 181


>Z50070-8|CAA90397.1|  263|Caenorhabditis elegans Hypothetical
           protein F43G6.8 protein.
          Length = 263

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 95  GRRRIFTGCSPAGDIRPVGNE 157
           GRRR+ +G +P G  RP   E
Sbjct: 4   GRRRLHSGSTPRGGERPAKRE 24


>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 168 LSKPSFPTGRMSPAGLQPVKIRRRPQHIF 82
           LS P +PT R      +P+KI  +   IF
Sbjct: 628 LSTPEYPTARRISLQFKPLKISNQKPDIF 656


>U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical
           protein C10G11.6 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 3   TRIRSNGAILITNDDRLRPD*DILKEKICAADDDESSQAVARRETFVL*EMKVC*GIFSK 182
           T IRS   +LI NDD +R   + + + +      E  Q   +R   +L E +V  GI  K
Sbjct: 80  TVIRSENHVLIHNDDEIR---NAISKAMLLDSASEHLQRKRKRLIDILDEQRVEEGITGK 136


>AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.2 protein.
          Length = 483

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 83  NMCCGRRRIFTGCS 124
           N CCG+R +F G S
Sbjct: 215 NRCCGKRDVFDGSS 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,887,564
Number of Sequences: 27780
Number of extensions: 86091
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)